OEWG 20100817

OBO-Edit Working Group, Tuesday August 17th, 2010 9.30 a.m. PDT

Conference call details: New GOC conference call numbers
US: 1 866 953 9688
UK: 0808 238 6001
pin: 801561

Agenda/Chair: Amina
Minutes: Harold
Attendees:

Action items carried over

• • New bugs in b5 ?
    • Cross product editor broken in beta 5
    • Loss of comments on save (reported by Jane Lomax - no bug report yet?)

• Feedback from the WG on pending/ required items for a full 2.1 release

• Getting back to regular meeting cycle.

Bug and Feature Tracker Updates

• OE Bug tracker

Update on status of fix for this bug:

Loss of interesction status on merge

• OE Feature tracker

Discussion items

• v2.1beta6
• Alex: fatal errors in chebi - how to get around those.
  • Chris: change your verification settings.
  • DOS: I didn't realize fatal error settings could be changed. subset defs from headers etc.

subset def fatal error solution is to go add the defs there.

• • Alex: first 200 errors and then other errors come up
  • DOS: suggestion setting verification checks by namespace
  • Karen: profiles for errors for load and save - ppl
  • Chris: one shared profile for GO and one for chebi

use tag filer to get subsets and also pick up subset

• • merge bug. will be in beta 7
  • cell sucked in all the ancestor terms. part_of relationships

• Chris: web environment called galaxy - generic and easy to plug in and make work flows.
  • http://berkeleybop.org/galaxy
  • easy to manage scripts that had to be managed before -
  • Chris: the main focus for me is going to be for term enrichment, annotation stuff and for people who can't install that yet.

Action Items

• Amina:
  • Post to wiki a list of working versions of OBO-Edit.
  • beta7 updates

Links

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