OEWG 20120703: Difference between revisions
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(Created page with "== OBO-Edit Working Group Meeting: Tuesday, July 3, 2012, 8:30am PDT == __NOTOC__ Conference call numbers:<br /> US: 1 866 953 9688<br /> UK: 0808 238 6001<br /> PIN: 801561<br /...") |
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* [http://sourceforge.net/tracker/?func=detail&aid=3537901&group_id=36855&atid=418260 Custom dictionaries] | * [http://sourceforge.net/tracker/?func=detail&aid=3537901&group_id=36855&atid=418260 Custom dictionaries] | ||
** OBO-Edit has two dictionaries that it uses to check for misspelled words in term names, definitions, etc. One is the "standard" dictionary distributed with OBO-Edit; the other is the "user" dictionary that each user can add words to (it starts out empty), which is stored in ~/oboedit_config/dict. | ** OBO-Edit has two dictionaries that it uses to check for misspelled words in term names, definitions, etc. One is the "standard" dictionary distributed with OBO-Edit; the other is the "user" dictionary that each user can add words to (it starts out empty), which is stored in ~/oboedit_config/dict. | ||
** Some ontologies have a lot of specialized terms that users would like OBO-Edit to recognize so that it didn't flag them as misspelled. This request is to allow users to specify (via the Configuration Manager) additional custom dictionary | ** Some ontologies have a lot of specialized terms that users would like OBO-Edit to recognize so that it didn't flag them as misspelled. This request is to allow users to specify (via the Configuration Manager) additional custom dictionary files that OBO-Edit will read. (Any words that the user adds to the dictionary from inside OBO-Edit will still be stored in user.dict.) | ||
==Future work== | ==Future work== |
Revision as of 13:44, 27 June 2012
OBO-Edit Working Group Meeting: Tuesday, July 3, 2012, 8:30am PDT
Conference call numbers:
US: 1 866 953 9688
UK: 0808 238 6001
PIN: 801561
Agenda/Chair: Nomi Harris
Minutes: Nomi
Attendees:
Bug and Feature Trackers
Fixed or newly added since last meeting
- Cycle Check doesn't work
- New cycle check method finds (possibly mixed-relationship) cycles by checking for objects that are descendants of one of their own children.
- The check works whether or not you have the reasoner on, but it doesn't find cycles that involve implied links found by the reasoner.
- The new cycle check is set by default to run on save and on manual verification; other times (e.g., on reasoner change) can be added by the user via the Verification Manager configuration panel.
- Name redundancy check not working in Text Editor
- It was checking for name redundancy when called with no arg (i.e., invoked from Verification Manager; check all terms) but not when called on a specific term (i.e., from Text Editor).
Current work
- Custom dictionaries
- OBO-Edit has two dictionaries that it uses to check for misspelled words in term names, definitions, etc. One is the "standard" dictionary distributed with OBO-Edit; the other is the "user" dictionary that each user can add words to (it starts out empty), which is stored in ~/oboedit_config/dict.
- Some ontologies have a lot of specialized terms that users would like OBO-Edit to recognize so that it didn't flag them as misspelled. This request is to allow users to specify (via the Configuration Manager) additional custom dictionary files that OBO-Edit will read. (Any words that the user adds to the dictionary from inside OBO-Edit will still be stored in user.dict.)
Future work
- is_Obsolete not recognized in verification check
- Different warnings from Verification Manager and Text Editor
Discussion
- Important announcement from Nomi
- Released OBO-Edit 2.2 on May 24 (I was going to call it 2.1.1 but decided that was too confusing)
- Passes the usual unit tests
- Mike Cherry tested it in the pipeline and said it seemed fine
- Several OEWG members said that it works for them
- Most important unfixed bug: problem on some Windows 7 computers