Ontology Development: Difference between revisions
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*[[CamEds Ontology meeting 2012-07-31|July 31]] | *[[CamEds Ontology meeting 2012-07-31|July 31]] | ||
*[[CamEds Ontology meeting 2012-08-31|August 7]] | *[[CamEds Ontology meeting 2012-08-31|August 7]] | ||
*[[CamEds Ontology meeting 2012-10-24|October 24]] | |||
==Editor's Conference calls-weekly NOW ON THURSDAYS, 8:30-9:15 AM PST== | ==Editor's Conference calls-weekly NOW ON THURSDAYS, 8:30-9:15 AM PST== |
Revision as of 04:54, 23 October 2012
This group's purpose is to ensure that the Gene Ontology represents biology in a way that is useful for gene product annotation of reference genomes and other MODs using the GO for annotation. The group serves as the link between biological knowledge that is gained from wet-bench scientists and the representation of that knowledge in the GO. Members of the group are responsible for reporting areas of the GO that need development and for suggesting changes and additions to the GO as needs arise. Members of the group serve as biological experts in domains that are covered by their organism. They are responsible for reviewing changes to be sure that they accurately reflect our current understanding of biology.
Content Development
Priority ranking
High Priority
- Cross-products - see Category:Cross_Products and Cross_Product_Guide
- Cell cross-products (Jane, Paola, Alex, Chris)
- Chebi cross-products (David, Jane, Tanya, Chris, Harold, Paola, Becky)
- Function-Process Links
- Chemical terms in GO(Part of the CHEbi alignment process)
- Transcription & transcription factor activity overhaul (Karen, David)
- Virus-related term overhaul (Jane Lomax, Brenley McIntosh, Rebecca Foulger & others)
- Apoptosis (Emily, Becky, Paola, Pablo and community experts)
Medium Priority
- Non-symbiotic multi-organism processes (Jane)
- Neurobiology Project (David, Tanya, Jane, Paola)
- MENGO collaboration (Jane)
- Signaling overhaul (Becky, signaling WG)
- Kidney Physiology (David, Yasmin, Doug, Tanya, Becky, Edinburgh GUDMAP group)
- Cardiac conduction (David, Ruth, Doug, Tanya, Becky, Paola, Stan)
- Neuro Behaviour Ontology (NBO)-GO alignment (Jane, George Gkoutos, Chris)
- Cell Cycle (Val, Pombe experts, GOEds)
Low priority
- Peripheral nervous system development
- Uberon alignment
Timeline
Proposed content work
A list of topics that we propose to address, but for which a timeline has not been set
- Revamp embryonic and post-embryonic terms to be logically defined with cross products to stage ontology.
- Rework disjoint terms as concluded in discussion on GO list.
- Overhaul translation, similar to what's being done for transcription. SF 1891512 is closed, but notes some issues for consideration. (midori 2010-10-04)
- Recombination and DNA repair
- RNA processes
- Bile formation and secretion processes
- multi-organism processes v/s cellular processes
- protein and peptidyl amino acid modification / protein processing
- Response to drug
- Polyketide synthases
- cell growth/proliferation/division
- oxidoreductases
Completed ontology content work
Other Ontology Development Group Activities
- Ongoing work on Quality control reports; see Ontology_Quality_Control (David, Jane, Chris, Tanya)
- Tracker wishlist
- Content Meeting Documentation
- Curator guides
- Ontology Documentation Drafts - for working on documentation of ontology content that will become part of the web-based documentation
- microbial ontology development and annotation
- New Ontology Editor Training
- Cell-type specific GO terms
- Reports
- Ontology Editing Examples
- Protege workshop
- SF Rota for Gene Ontology requests
- TermGenie1 Gatekeeper Rota
- Template-able Requests Prior To TG
- Regulation
- Jenkins
- Enzymes and EC mappings
- Adding missing CHEBI xps
- [Production Terms]
- [Phage Terms]
Cambridge Editors' meetings - weekly Tuesday 10-11 AM
Editor's Conference calls-weekly NOW ON THURSDAYS, 8:30-9:15 AM PST
- July 11
- July 18
- July 25
- Aug 1
- Aug 8
- Aug 15
- Aug 22
- Aug 29
- Sep 5
- Sep 12
- Sep 20
- Sep 26 Extra call
- Sep 27
- Oct 4
- Oct 11
- Oct 18
- Oct 25
- Nov 1
- Nov 8
- Nov 15
- Nov 22
- Nov 29