Ontology Development: Difference between revisions

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===Projects===
===Projects===
====High Priority/Ongoing====
====High Priority/Ongoing====
*[[Transcription 2018]] (Pascale, Ruth, Astrid, Marcio, Paul T)
*[[Cell Cycle]] (Val, Pombe experts, GOEds)
*[[Cell Cycle]] (Val, Pombe experts, GOEds)
*[[Enzymes and EC mappings]]
*[[Enzymes and EC mappings]]
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====Low priority====
====Low priority====
*[[Neuro Behaviour Ontology (NBO)-GO alignment]] (Jane, George Gkoutos, Chris, DavidOS)
*[[Neuro Behaviour Ontology (NBO)-GO alignment]] (Jane, George Gkoutos, Chris, DavidOS)
*Peripheral nervous system development
*[[Uberon alignment]] (DavidOS)
*[[microbial ontology development and annotation]]
*[[microbial ontology development and annotation]]


====Recently completed projects====
====Recently completed projects====
*[[Uberon alignment]] (DavidH)
*Addition of cross-products - see [[:Category:Cross_Products]] and [[Cross_Product_Guide]]
*Addition of cross-products - see [[:Category:Cross_Products]] and [[Cross_Product_Guide]]
**[[Cell cross-products]], [[Cell-type specific GO terms]] (Jane, Paola, Alex, Chris, DavidOS)
**[[Cell cross-products]], [[Cell-type specific GO terms]] (Jane, Paola, Alex, Chris, DavidOS)
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A list of topics that  we propose to address, but for which a timeline has not been set
A list of topics that  we propose to address, but for which a timeline has not been set


*Peripheral nervous system development
*Revamp embryonic and post-embryonic terms to be logically defined with cross products to stage ontology.  
*Revamp embryonic and post-embryonic terms to be logically defined with cross products to stage ontology.  
*Overhaul [[translation]], similar to what's being done for transcription. [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=1891512&group_id=36855| SF 1891512] is closed, but notes some issues for consideration. (midori 2010-10-04)
*Overhaul [[translation]], similar to what's being done for transcription. [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=1891512&group_id=36855| SF 1891512] is closed, but notes some issues for consideration. (midori 2010-10-04)
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*[[:Category:Curator Guides|Curator guides]]
*[[:Category:Curator Guides|Curator guides]]
*[[Editor_Guide]]
*[[Editor_Guide]]
*[[Editor_file_guide]]
*[[Protege_setup_for_GO_Eds|Protege setup for GO Eds]]
*[[Ontology Documentation Drafts]] - for working on documentation of ontology content that will become part of the web-based documentation
*[[Ontology Documentation Drafts]] - for working on documentation of ontology content that will become part of the web-based documentation
*[[New Ontology Editor Training]]
*[[New Ontology Editor Training]]
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[[Category:Ontology]]
[[Category:Ontology]]


===LEGO===
===Complex Modeling===
*[[Regulation]]
*[[Regulation]]


*[[Noctua_meeting_140929|Modelling complex annotations in LEGO/noctua - meeting 140929]]
*[[Noctua_meeting_140929|Modelling complex annotations in noctua - meeting 140929]]


===Annotation extensions===
===Annotation extensions===
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[[Category:Meetings]]
[[Category:Meetings]]


===Editor's Conference calls-weekly NOW ON THURSDAYS, 8:30-9:15 AM PST===
===Editor's Conference calls-weekly NOW ON MONDAYS, 12:00PM-1:00PM EST===


*[[Ontology editor's conference call minutes 2011|2011 minutes]]
*[[Ontology editor's conference call minutes 2011|2011 minutes]]
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*[[Ontology editor's conference call minutes Jan-June 2014|Jan-June 2014 minutes]]
*[[Ontology editor's conference call minutes Jan-June 2014|Jan-June 2014 minutes]]
*[[Ontology editor's conference call minutes July-Dec 2014|July-Dec 2014 minutes]]
*[[Ontology editor's conference call minutes July-Dec 2014|July-Dec 2014 minutes]]
 
*[[Ontology editor's conference call minutes Jan-June 2015|Jan-June 2015 minutes]]
*[[Ontology meeting 2015-01-06|Jan 6]] First call of 2015
*[[Ontology editor's conference call minutes July-Dec 2015|July-Dec 2015 minutes]]
*[[Ontology meeting 2015-01-13|Jan 13]]
*[[Ontology editor's conference call minutes Jan-June 2016|Jan-June 2016 minutes]]
*[[Ontology meeting 2015-01-20|Jan 20]]
*[[Ontology editor's conference call minutes July-Dec 2016|July-Dec 2016 minutes]]
*[[Ontology meeting 2015-01-27|Jan 27]]
*[[Ontology editor's conference call minutes Jan-June 2017|Jan-June 2017 minutes]]
*[[Ontology meeting 2015-02-05|Feb 5]]
*[[Ontology editor's conference call minutes July-Dec 2017|July-Dec 2017 minutes]]
*[[Ontology meeting 2015-02-12|Feb 12]]
*[[Ontology editor's conference call minutes Jan-June 2018|Jan-June 2018 minutes]]
*[[Ontology meeting 2015-02-19|Feb 19]]
*[[Ontology meeting 2015-02-26|Feb 26]]
*[[Ontology meeting 2015-03-05|Mar 5]]
*[[Ontology meeting 2015-03-12|Mar 12]]
*[[Ontology meeting 2015-03-19|Mar 19]]
*[[Ontology meeting 2015-03-26|Mar 26]]
*[[Ontology meeting 2015-04-02|Apr 2]]
*[[Ontology meeting 2015-04-09|Apr 9]]
*[[Ontology meeting 2015-04-16|Apr 16]]
*[[Ontology meeting 2015-04-23|Apr 23]]
*[[Ontology meeting 2015-04-30|Apr 30]]
*[[Ontology meeting 2015-05-07|May 7]]
*[[Ontology meeting 2015-05-14|May 14]]
*[[Ontology meeting 2015-05-21|May 21]] Cancelled
*[[Ontology meeting 2015-05-28|May 28]]
*[[Ontology meeting 2015-06-04|Jun 4]]
*[[Ontology meeting 2015-06-11|Jun 11]]
*[[Ontology meeting 2015-06-18|Jun 18]]
*[[Ontology meeting 2015-06-25|Jun 25]]
*[[Ontology meeting 2015-07-02|Jul 2]]
*[[Ontology meeting 2015-07-09|Jul 9]] Cancelled
*[[Ontology meeting 2015-07-16|Jul 16]]
*[[Ontology meeting 2015-07-23|Jul 23]]
*[[Ontology meeting 2015-07-30|Jul 30]]
*[[Ontology meeting 2015-08-06|Aug 6]]
*[[Ontology meeting 2015-08-13|Aug 13]]
*[[Ontology meeting 2015-08-20|Aug 20]]
*[[Ontology meeting 2015-08-27|Aug 27]]
*[[Ontology meeting 2015-09-03|Sep 3]] Cancelled (traveling back from GOC meeting)
*[[Ontology meeting 2015-09-10|Sep 10]]
*[[Ontology meeting 2015-09-17|Sep 17]]
*[[Ontology meeting 2015-09-24|Sep 24]]
*[[Ontology meeting 2015-10-01|Oct 1]]
*[[Ontology meeting 2015-10-08|Oct 8]]
*[[Ontology meeting 2015-10-15|Oct 15]]
*[[Ontology meeting 2015-10-22|Oct 22]]
*[[Ontology meeting 2015-10-29|Oct 29]]
*[[Ontology meeting 2015-11-05|Nov 5]]
*[[Ontology meeting 2015-11-12|Nov 12]]
*[[Ontology meeting 2015-11-19|Nov 19]]
*[[Ontology meeting 2015-11-26|Nov 26]] Cancelled (Thanksgiving)
*[[Ontology meeting 2015-12-03|Dec 3]]
*[[Ontology meeting 2015-12-10|Dec 10]] Cancelled (several conflicting meetings)
*[[Ontology meeting 2015-12-17|Dec 17]]
*[[Ontology meeting 2015-12-24|Dec 24]] Cancelled (Special leave day at EBI)
*[[Ontology meeting 2015-12-31|Dec 31]] Cancelled (Special leave day at EBI)
 
*[[Ontology meeting 2016-01-07|Jan 7]] First call of 2016
*[[Ontology meeting 2016-01-14|Jan 14]]
*[[Ontology meeting 2016-01-21|Jan 21]]
*[[Ontology meeting 2016-01-28|Jan 28]]


==Useful Links==
==Useful Links==
*[[Completed ontology content work]]
*[[Completed ontology content work]]
*[[SF + TG Rota for Gene Ontology requests]]
*[[SF + TG Rota for Gene Ontology requests|Github and TermGenie Rota for Ontology Requests]]
*[[Ontology_Development_Reports|Ontology Development Reports]] (discontinued Nov 2010)
*[[Ontology_Development_Reports|Ontology Development Reports]] (discontinued Nov 2010)


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==Administrative==
==Administrative==
*[[Ontology Development group summary]]
*[[Ontology Development group summary]]
*[[Meeting_minutes:_general_topics|Miscellaneous meeting minutes]]
 


[[Category:Ontology]]
[[Category:Ontology]]

Revision as of 04:18, 15 March 2018

This group's purpose is to ensure that the Gene Ontology represents biology in a way that is useful for gene product annotation of reference genomes and other MODs using the GO for annotation. The group serves as the link between biological knowledge that is gained from wet-bench scientists and the representation of that knowledge in the GO. Members of the group are responsible for reporting areas of the GO that need development and for suggesting changes and additions to the GO as needs arise. Members of the group serve as biological experts in domains that are covered by their organism. They are responsible for reviewing changes to be sure that they accurately reflect our current understanding of biology.

Content Development

Projects

High Priority/Ongoing

  • Transcription 2018 (Pascale, Ruth, Astrid, Marcio, Paul T)
  • Cell Cycle (Val, Pombe experts, GOEds)
  • Enzymes and EC mappings
  • Synapse project (Synapse experts, DavidOS, Becky Foulger)
  • Extracellular RNA-containing vesicles (Paola, Aleks and community experts)
  • Ciliary components and processes (Paola, Karen Christie, SYSCILIA experts)
  • Autophagy (Paul D, Marc F, David H, Ruth, Paola and community experts)

Medium Priority

Low priority

Recently completed projects

Proposed content work

A list of topics that we propose to address, but for which a timeline has not been set

Guides, Training and Documentation

Other Ontology Development Group Activities

QC

TermGenie

Website

Protege

Complex Modeling

Annotation extensions

Meetings

Cambridge Editors' meetings - weekly Tuesday 10-11 AM


SourceForge Meetings: Fortnightly, Wednesdays, 4:30-5:15pm BST - now fortnightly, Mondays, 4-5pm BST

Editor's Conference calls-weekly NOW ON MONDAYS, 12:00PM-1:00PM EST

Useful Links

Administrative