Ontology editor plugins

Redirect to:

• Protege setup for GO Eds

Protege Plug-Ins

Plugins that emulate OBO-Edit

• Jim Balhoff's obsoletion-util p4 plugin https://github.com/balhoff/obo-actions/downloads
  • Once installed, you should see an "obsolete" option in your Edit menu
• OBO style graph view for Protege https://github.com/owlcollab/obographview
  • See Views/Ontology views
• Term Metadata editor plugin (Alpha) https://github.com/hdietze/protege-obo-plugins/raw/master/org.protege.oboeditor.jar
  • Expect more releases soon
• Spell checker plugin (planned)

Other useful plugins

• Jim Balhoff's depictions plugin https://github.com/balhoff/image-depictions-view/downloads
• Jim Balhoff's obo-lint P4 plugin https://github.com/balhoff/obo-lint/downloads

Next Generation GeneOntology Annotation Model (a.k.a. LEGO)

• LEGO annotation view Protege plug-in http://code.google.com/p/owltools/downloads/list?q=lego
  • Documentation: http://geneontology.org//experimental/lego/docs/Lego-plugin.docx
  • Beta version (including minimal model generation): http://geneontology.org//experimental/lego/tmp

Note: this has now be succeeded by Orion, the web based version