Ontology meeting 2012-01-11

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Brief communications


In preparation for the Protege workshop in Hinxton

  • Do we need to have a call with all participants before then? We already have a call planned for Thu. Jan. 19th to discuss Paul T's proposal. Otherwise, we can all refer to the Protege workshop wiki for the list of tools we need to have up and running on our laptops.


New TG

  • We agreed that the GO Editors could take turns in acting as gatekeepers for the new Termgenie, to check terms submitted by curators and by other editors.

Here's a proposal for a rota, that tries to take into account SF triage and GO-help rotas as well as traveling to the Hinxton workshop. Feel free to edit if you're not happy with the schedule:

Week beginning Jan. 9th: Becky

Week beginning Jan. 16th: David

Week beginning Jan. 23rd: Paola

Week beginning Jan. 30th: Jane

Week beginning Feb. 6th: Tanya


  • FYI, we've submitted a request in the TG tracker for a template to create chemical-binding terms.

http://code.google.com/p/termgenie/issues/detail?id=16&q=label%3AType-Defect


Discussion notes


Discussion notes I: regulation_of by regulation_of terms

  • It seems that we still need a long-term solution for terms such as the following:

https://mailman.stanford.edu/pipermail/go-ontology/2011-December/002052.html

This also relates to many SF requests we have, e.g. "negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from RNA Polymerase II promoter". These unresolved requests may be retrieved by the following link (which also includes "in response to" terms that are in the agenda for the following call):

https://sourceforge.net/tracker/?limit=25&func=&group_id=36855&atid=440764&assignee=&status=&category=&artgroup=&keyword=&submitter=&artifact_id=&assignee=&status=1&category=&artgroup=&submitter=diannafisk&keyword=&artifact_id=&submit=Filter&mass_category=&mass_priority=&mass_resolution=&mass_assignee=&mass_artgroup=&mass_status=&mass_cannedresponse=&_visit_cookie=6bc221a73edb707c2244b67272dcc757

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