Ontology meeting 2012-02-08

30 MINUTE MEETING

Report

Discussion notes

Discussion notes I: REGULATION BY

• A walk-through reminder of creating equivalent classes in Protege, and interpreting the reasoner output.
• Will allow us to come up with rules for TG1 for creating 'regulation of x by regulation of transcription' terms. (Midori submitted a bulk load last week):

• 3483867 2012-02-03 positive regulation of transcription term
• 3483892 2012-02-03 NTR: hematopoietic stem cell migration into bone marrow
• 3483894 2012-02-03 NTR: self-proteolysis
• 3483941 2012-02-03 ntr: reg iron ion transport by reg txn
• 3483943 2012-02-03 ntr: reg meiosis by reg txn
• 3483944 2012-02-03 ntr: reg carbohydrate metab by reg txn
• 3483945 2012-02-03 ntr: -reg aa biosynth by -reg txn
• 3483946 2012-02-03 ntr: +reg DNA repair by +reg txn
• 3483947 2012-02-03 ntr: reg cell separation by reg txn
• 3483948 2012-02-03 ntr: reg conjugation by reg txn
• 3483949 2012-02-03 ntr: reg cellular resp to oxid stress by reg txn
• 3483950 2012-02-03 ntr: reg histone modification by reg txn
• 3483951 2012-02-03 ntr: +reg ergosterol biosynth by +reg txn
• 3483953 2012-02-03 ntr: +reg phospholipid biosynth by +reg txn
• 3483954 2012-02-03 ntr: reg cell cycle cytokinesis by reg txn
• 3483955 2012-02-03 ntr: reg fungal cell wall biogenesis by reg txn
• 3483956 2012-02-03 ntr: reg 4,6-pyruvyl-yada biosynth by reg txn
• 3483957 2012-02-03 ntr: -reg transmembrane transport by -reg txn
• 3484044 2012-02-03 NTR attachemtn of chromatin to nuclear envelope

Task List