Ontology meeting 2013-04-25

Minutes: Jane

Attendees:

Follow-up: cell-type templates

See http://wiki.geneontology.org/index.php/Ontology_meeting_2013-04-18#Cell_type_templates

Follow-up on SF upgrade

See http://wiki.geneontology.org/index.php/Ontology_meeting_2013-04-18#SF_upgrade

Website

This discussion is about content of the ontology-related pages. Can we somehow link to some of the Drupal pages that are finished like the ontology download page? It seems that the whole website is going to take some time.

Subset metadata

Tony is adding the 'do not annotate' anti-slims to the DB so they can be used by in QuickGO and protein2go. They'd prefer to have the subset comments at the level of the subset itself rather than as a comment added to each individual term that belongs to that subset. Is there any way we had do this in OBO format, in the header or something?

Cell cycle issues

starts_with ends_with

Is there any reason we can't start using these in xps in gene_ontology_write.obo? I need them for the cell cycle logical defs.

happens_during

For between phases and transitions. I need this before I can progress editing. Is this the correct relation? What's the process for adding a new relation to gene_ontology_write.obo?