Ontology meeting 2013-07-11: Difference between revisions

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I've spoken to Tony and it seems QuickGO only assumes GO is acyclic over is_a and part_of. Cycles over other relationships shouldn't cause a problem. We could try adding one to see what happens, but we would need to fix OE behaviour first.
I've spoken to Tony and it seems QuickGO only assumes GO is acyclic over is_a and part_of. Cycles over other relationships shouldn't cause a problem. We could try adding one to see what happens, but we would need to fix OE behaviour first.
===Behaviour===
There's a ticket which includes a proposal to update the def of behaviour [https://sourceforge.net/p/geneontology/ontology-requests/10239/]. David has also suggested making a disjoint between behaviour and developmental process.

Revision as of 09:35, 4 July 2013

Attendees:

Minutes:

Plan for importing reactions from Rhea into GO

See Enzymes_and_EC_mappings#Plan_of_Action

Let's discuss the plan, and figure out where we are wrt the xp pattern for these terms, and the xp set.

Follow-up: Hydrogen biosynthetic process

See background here http://wiki.geneontology.org/index.php/Ontology_meeting_2013-06-06#Follow-up:_metabolism_terms and Jane's email dated June 27th (subject Fwd: Re: Templates absent in Term Genie).

Suggestion: 'hydrogen generation' instead of 'hydrogen biosynthetic process'

Follow-up: Giardia terms

Request from UC Davis group.

Follow-up: Action potential

See AI here: http://wiki.geneontology.org/index.php/Ontology_meeting_2013-02-14#Action_potential

Cycles in GO

I've spoken to Tony and it seems QuickGO only assumes GO is acyclic over is_a and part_of. Cycles over other relationships shouldn't cause a problem. We could try adding one to see what happens, but we would need to fix OE behaviour first.

Behaviour

There's a ticket which includes a proposal to update the def of behaviour [1]. David has also suggested making a disjoint between behaviour and developmental process.