Ontology meeting 2013-07-11
Attendees:
Minutes:
Plan for importing reactions from Rhea into GO
See Enzymes_and_EC_mappings#Plan_of_Action
Let's discuss the plan, and figure out where we are wrt the xp pattern for these terms, and the xp set.
As an addendum to this, David will give an update on an test case for a metabolic process.
Follow-up: Hydrogen biosynthetic process
See background here http://wiki.geneontology.org/index.php/Ontology_meeting_2013-06-06#Follow-up:_metabolism_terms and Jane's email dated June 27th (subject Fwd: Re: Templates absent in Term Genie).
Suggestion: 'hydrogen generation' instead of 'hydrogen biosynthetic process'
Follow-up: Giardia terms
Request from UC Davis group.
Follow-up: Action potential
See AI here: http://wiki.geneontology.org/index.php/Ontology_meeting_2013-02-14#Action_potential
Cycles in GO
I've spoken to Tony and it seems QuickGO only assumes GO is acyclic over is_a and part_of. Cycles over other relationships shouldn't cause a problem. We could try adding one to see what happens, but we would need to fix OE behaviour first.
Behaviour
There's a ticket which includes a proposal to update the def of behaviour [1]. David has also suggested making a disjoint between behaviour and developmental process.