Ontology meeting 2016-07-21
Attendees:
Minutes:
Regrets: Paola
Slim versioning
interPro wants to release new version of slim, but would like to maintain access to old one. Should version IRI PURLs resolve?
Assertion or inference?
Should we assert the is_a or let the reasoner do the job? Also confirm Jenkins check is disabled.
[Term]
id: GO:0090685
name: RNA localization to nucleus
namespace: biological_process
def: "A macromolecular localization process in which RNA is transported to and maintained in a location within the nucleus." [GOD:mah, PMID:26305931]
synonym: "RNA localisation to nucleus" EXACT [GOC:mah]
is_a: GO:0006403 ! RNA localization
intersection_of: GO:0006403 ! RNA localization
intersection_of: has_target_end_location GO:0005634 ! nucleus
Request for obsoletion
https://github.com/geneontology/go-ontology/issues/1059
https://github.com/geneontology/go-ontology/issues/12533
Val said "I often wonder with terms like this, if there is no difference between the process DNA replication initiation and DNA replication initiation from late origin except via regulation
should the term DNA replication initiation from late origin exist, or should we only have the regulation terms in GO?"
Midori said "The mechanism and involved gene products are the same at early origins and at late origins, so there is no differentium to distinguish "initiation at late origin" from "initiation"."
Xrefs to Reactome
Looks like this wasn't fully addressed yet. See email thread here: While Peter is on site at Jax, we should devise and action plan for this.
https://mailman.stanford.edu/pipermail/go-ontology/2016-June/007619.html
https://mailman.stanford.edu/pipermail/go-ontology/2016-June/007620.html
https://mailman.stanford.edu/pipermail/go-ontology/2016-June/007621.html
And this GH issue:
https://github.com/geneontology/go-ontology/issues/12518