Ontology meeting 2016-10-27: Difference between revisions

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We realised that we could do with a single GH user - one for sending emails to help@uniprot.org, since they can triage UniProt annotations regardless of their provenance (SIB vs GOA). Melanie will contact Sylvain with our proposal, and we'll go from there.
We realised that we could do with a single GH user - one for sending emails to help@uniprot.org, since they can triage UniProt annotations regardless of their provenance (SIB vs GOA). Melanie will contact Sylvain with our proposal, and we'll go from there.
===persona.org===
I presume that this is already being looked into, but I couldn't find a ticket for it, so just checking:
"Persona is no longer actively developed by Mozilla. Mozilla has committed to operational and security support of the persona.org services until November 30th, 2016.
On November 30th, 2016, Mozilla will shut down the persona.org services. Persona.org and related domains will be taken offline.
If you run a website that relies on Persona, you need to implement an alternative login solution for your users before this date. For more information, see this guide to migrating your site away from Persona:
https://wiki.mozilla.org/Identity/Persona_Shutdown_Guidelines_for_Reliers"


===GitHub projects===
===GitHub projects===

Revision as of 08:18, 26 October 2016

Attendees:

Minutes: David OS?

Regrets: David H

GoToMeeting invite: https://global.gotomeeting.com/join/859015101

Items for discussion at GOC LA meeting

A reminder to add any items we'd like to discuss (or be discussed if we're not present in person) here: http://wiki.geneontology.org/index.php/2016_Los_Angeles_GOC_Meeting_Agenda

Update: proposal on modified protein terms

For background, see http://wiki.geneontology.org/index.php/Ontology_meeting_2016-10-06#Follow-up:_Modified_proteins

FYI, Paola did some edits to the Google doc draft and passed it on to David H, who will look at it next week and prepare some slides for the GOC meeting. So, no work needed now. Link to the doc: https://docs.google.com/document/d/17U1TD3n_QI9coCycJcOUBDa2nRf3ggPR-tKjDMa_ff8/edit

ec2go mappings

(If not resolved yet) Stemming from Doug's comment on the recent change: "So it sounds like this is a planned and good loss of annotation. Is an ~80% loss of ec2go-derived annotations similar to what MGI sees? I would think this might be similar for any group using the ec2go file? I guess if the ec dbxrefs were to higher level terms then including annotation to all the children could account for the vast majority of derived annotations. On a related note, I still did see three "-" containing EC numbers in ec2go: EC:4.2.1.-xref: > GO:scalarane-17alpha-19-diol synthase activity GO:0102643. Is that something that needs cleaning?"

Follow-up: Github Ontology Tracker Update - incomplete

See https://github.com/geneontology/go-site/issues/240.

Follow-up: contacts for UniProt annotations

Background: http://wiki.geneontology.org/index.php/Ontology_meeting_2016-10-13#Update:_contacts_for_UniProt_annotations

We realised that we could do with a single GH user - one for sending emails to help@uniprot.org, since they can triage UniProt annotations regardless of their provenance (SIB vs GOA). Melanie will contact Sylvain with our proposal, and we'll go from there.

persona.org

I presume that this is already being looked into, but I couldn't find a ticket for it, so just checking:

"Persona is no longer actively developed by Mozilla. Mozilla has committed to operational and security support of the persona.org services until November 30th, 2016. On November 30th, 2016, Mozilla will shut down the persona.org services. Persona.org and related domains will be taken offline. If you run a website that relies on Persona, you need to implement an alternative login solution for your users before this date. For more information, see this guide to migrating your site away from Persona: https://wiki.mozilla.org/Identity/Persona_Shutdown_Guidelines_for_Reliers"

GitHub projects

See background here: http://wiki.geneontology.org/index.php/Ontology_meeting_2016-10-06#GitHub_Projects

Plan is to look at https://github.com/geneontology/go-ontology/projects/1 and see how this works for us. Feel free to add there.