Ontology meeting 2016-10-27

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Attendees:

Minutes:

Regrets: David H

GoToMeeting invite: https://global.gotomeeting.com/join/859015101

Update: proposal on modified protein terms

For background, see http://wiki.geneontology.org/index.php/Ontology_meeting_2016-10-06#Follow-up:_Modified_proteins

FYI, Paola did some edits to the Google doc draft and passed it on to David H, who will look at it next week and prepare some slides for the GOC meeting. Link to the doc: https://docs.google.com/document/d/17U1TD3n_QI9coCycJcOUBDa2nRf3ggPR-tKjDMa_ff8/edit

ec2go mappings

(If not resolved yet) Stemming from Doug's comment on the recent change: "So it sounds like this is a planned and good loss of annotation. Is an ~80% loss of ec2go-derived annotations similar to what MGI sees? I would think this might be similar for any group using the ec2go file? I guess if the ec dbxrefs were to higher level terms then including annotation to all the children could account for the vast majority of derived annotations. On a related note, I still did see three "-" containing EC numbers in ec2go: EC:4.2.1.-xref: > GO:scalarane-17alpha-19-diol synthase activity GO:0102643. Is that something that needs cleaning?"

Follow-up: Github Ontology Tracker Update - incomplete

See https://github.com/geneontology/go-site/issues/240.

Follow-up: contacts for UniProt annotations

Background: http://wiki.geneontology.org/index.php/Ontology_meeting_2016-10-13#Update:_contacts_for_UniProt_annotations

We realised we could do with a single GH user - one for sending emails to help@uniprot.org, since they can triage UniProt annotations regardless of their provenance (SIB vs GOA). Melanie will contact Sylvain with our proposal, and we'll go from there.

GitHub projects

See background here: http://wiki.geneontology.org/index.php/Ontology_meeting_2016-10-06#GitHub_Projects

Plan is to look at https://github.com/geneontology/go-ontology/projects/1 and see how this works for us. Feel free to add there.