Ontology meeting 2016-12-01: Difference between revisions
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Attendees: | Attendees: Moni, Jim, Melanie, Tanya, Paola, Harold, DavidH, DavidOS, Chris (on a plane), Paul T | ||
Regrets: | Regrets: Judy | ||
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==PI discussion of next months' EBI-GO work plan== | ==PI discussion of next months' EBI-GO work plan== | ||
End of subcontract with EBI of February 2017 | End of subcontract with EBI of February 2017 - influences work of EBI-GO (DOS, Paola, Melanie) team. Helen has proposed that EBI-GO will step off the GO rotas (GH, TG, Helpdesk) starting December 12th to allow wrap-up of existing tickets concomitantly with other tasks. David Hill (as Ontology Lead ) and GO PIs will discuss further with Helen. | ||
Note that TAIR's subcontract also ends at the end of Feb. 2017. | Others funded by GOC are interested in training and joining Ontology Dev team - training being planned. | ||
Note that TAIR's subcontract also ends at the end of Feb. 2017. TAIR/Phoenix plans to scale back involvement in day to day, non-plant related ontology work after March 1, 2017, stepping off the GH/TG rota, and scaling back GO Helpdesk participation to 2x/year. | |||
==Tickets for discussion at this meeting:== | ==Tickets for discussion at this meeting:== | ||
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See https://github.com/geneontology/go-ontology/projects/1, column labeled "Ontology Call December 1, 2016" on the right | See https://github.com/geneontology/go-ontology/projects/1, column labeled "Ontology Call December 1, 2016" on the right | ||
#[https://github.com/geneontology/go-ontology/issues/12843 uberon_import includes a MIREOTed subset of GO, and this plays havoc with the inference pipeline] | |||
#[https://github.com/geneontology/go-ontology/issues/12815 Add check for identical definitions in ontology file?] | #[https://github.com/geneontology/go-ontology/issues/12815 Add check for identical definitions in ontology file?] | ||
#[https://github.com/geneontology/go-ontology/issues/12766 Review MF term GO:0050827 'toxin receptor binding'] | #[https://github.com/geneontology/go-ontology/issues/12766 Review MF term GO:0050827 'toxin receptor binding'] |
Latest revision as of 01:22, 2 December 2016
Attendees: Moni, Jim, Melanie, Tanya, Paola, Harold, DavidH, DavidOS, Chris (on a plane), Paul T
Regrets: Judy
GoToMeeting invite: https://global.gotomeeting.com/join/859015101
PI discussion of next months' EBI-GO work plan
End of subcontract with EBI of February 2017 - influences work of EBI-GO (DOS, Paola, Melanie) team. Helen has proposed that EBI-GO will step off the GO rotas (GH, TG, Helpdesk) starting December 12th to allow wrap-up of existing tickets concomitantly with other tasks. David Hill (as Ontology Lead ) and GO PIs will discuss further with Helen.
Others funded by GOC are interested in training and joining Ontology Dev team - training being planned.
Note that TAIR's subcontract also ends at the end of Feb. 2017. TAIR/Phoenix plans to scale back involvement in day to day, non-plant related ontology work after March 1, 2017, stepping off the GH/TG rota, and scaling back GO Helpdesk participation to 2x/year.
Tickets for discussion at this meeting:
See https://github.com/geneontology/go-ontology/projects/1, column labeled "Ontology Call December 1, 2016" on the right
- uberon_import includes a MIREOTed subset of GO, and this plays havoc with the inference pipeline
- Add check for identical definitions in ontology file?
- Review MF term GO:0050827 'toxin receptor binding'
- Ghost relations in the obo-file
- Discussion of 'positive regulation' and 'maintenance'
- MP: (recently removed ) parentage in amino acid metabolism
- Merge directly_activates/inhibits relations into directly_positively/negatively_regulates.