Ontology meeting 2016-12-01: Difference between revisions
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See https://github.com/geneontology/go-ontology/projects/1, column labeled "Ontology Call December 1, 2016" on the right | See https://github.com/geneontology/go-ontology/projects/1, column labeled "Ontology Call December 1, 2016" on the right | ||
#[https://github.com/geneontology/go-ontology/issues/12843 uberon_import includes a MIREOTed subset of GO, and this plays havoc with the inference pipeline] | |||
#[https://github.com/geneontology/go-ontology/issues/12815 Add check for identical definitions in ontology file?] | #[https://github.com/geneontology/go-ontology/issues/12815 Add check for identical definitions in ontology file?] | ||
#[https://github.com/geneontology/go-ontology/issues/12766 Review MF term GO:0050827 'toxin receptor binding'] | #[https://github.com/geneontology/go-ontology/issues/12766 Review MF term GO:0050827 'toxin receptor binding'] |
Revision as of 11:19, 1 December 2016
Attendees:
Regrets:
GoToMeeting invite: https://global.gotomeeting.com/join/859015101
PI discussion of next months' EBI-GO work plan
End of subcontract with EBI of February 2017 - influences work of EBI-GO (DOS, Paola, Melanie) team. Helen has proposed that EBI-GO will step off the GO rotas (GH, TG, Helpdesk) starting December 12th to allow wrap-up of existing tickets concomitantly with other tasks. David Hill (as Ontology Lead ) and GO PIs will discuss further with Helen.
Others funded by GOC are interested in training and joining Ontology Dev team - training being planned.
Note that TAIR's subcontract also ends at the end of Feb. 2017.
Tickets for discussion at this meeting:
See https://github.com/geneontology/go-ontology/projects/1, column labeled "Ontology Call December 1, 2016" on the right
- uberon_import includes a MIREOTed subset of GO, and this plays havoc with the inference pipeline
- Add check for identical definitions in ontology file?
- Review MF term GO:0050827 'toxin receptor binding'
- Ghost relations in the obo-file
- Discussion of 'positive regulation' and 'maintenance'
- MP: (recently removed ) parentage in amino acid metabolism
- Merge directly_activates/inhibits relations into directly_positively/negatively_regulates.