Ontology meeting 2017-04-14

• Bluejeans: https://bluejeans.com/164681006

Agenda

Documentation

• Format for documentation on github: Kimberly and David have been working on the SOP Google document.
  • https://github.com/geneontology/go-ontology/pull/13204
• Need to test this on a new user and transition to github md format

GOC Meeting, Corvallis, Oregon

• GOC Meeting Agenda - Ontology-Related Issues
  • http://wiki.geneontology.org/index.php/2017_Corvallis_GOC_Meeting_Agenda
  • What to discuss in Corvallis?
  • Is there time for more ontology editors training in Corvallis or should we try to schedule another workshop over the summer?

Term Genie-type Requests

• We are getting tickets for adding terms that previously would have come in through TermGenie.
• What is the long-term plan for replacing TermGenie?

Ontology Tickets

• Import pipeline
  • Fixing import generation
  • Ontology imports into Protege cause undesirable side effects
  • taxon imports incomplete?
  • Load of go-plus.owl fails while importing uberon_import.owl
  • Automate generation of import modules
  • Taxon constraint for GO:0001944
• Modified protein binding proposal
• What do we need to do for the single step BP?

Editors Rota

• David H away 4/14 - 4/23
• Kimberly away 4/17 - 4/22
• Pascale away 4/14 - ?

Minutes

• On call: Chris, Harold, Karen, Kimberly, Moni, Pascale, Tanya
• github email notifications don't always seem to correspond to the person who actually commented
  • not sure what's going on

Documentation

• Please check Google document and give feedback
• Organization
  • Protege
  • github
  • Ontology editing
• readthedocs - use this?

GOC Meeting - Corvallis, Oregon

• Ontology issues
• Ontology editing
  • Karen, Harold will not be in attendance, so probably not the best time for a full blown workshop