Ontology meeting 2017-07-14: Difference between revisions

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**Resolution: use the daily release OBO file, instead of the editors OBO file
**Resolution: use the daily release OBO file, instead of the editors OBO file
*[https://github.com/geneontology/go-ontology/issues/13812 Need SOP for avoiding ID clashes when 1 editor has multiple branches awaiting merge]
*[https://github.com/geneontology/go-ontology/issues/13812 Need SOP for avoiding ID clashes when 1 editor has multiple branches awaiting merge]
**Protege should remember IDs that have been used, if that option is selected in preferences in Auto-generated ID section of Setting ID ranges
**Protege should remember IDs between Protege session, if that option is selected in preferences in Auto-generated ID section of Setting ID ranges - this preference should be checked
**Do we need checks for potential collisions?
**Do we need checks for potential collisions?
**To fix this, either hand edit the file, or abandon the working branch
**To fix this, either hand edit the file, or abandon the working branch

Revision as of 12:36, 14 July 2017

Conference Line

Agenda

DavidH will present a quick workaround for making logical definitions and subclasses using terms with single quotes.

Other discussion: https://github.com/geneontology/go-ontology/projects/1

August Meeting Agenda


Minutes

  • On call: Barbara, Chris, David H., David OS, Eric, Jim, Judy, Karen, Kimberly, Paul T., Tanya

Editing Single Quote-Containing Terms

  • Can set preferences to show term IDs, not names
  • Also a shortcut for setting this preference in view

Review August Ontology Meeting Schedule

  • Review OWL
  • Review relations
  • Review design patterns
  • Review imports
    • Most are straightforward except for ChEBI, which requires more data management
  • Dealing with build failures
    • Take screenshots when this happens for documentation
  • Tickets
    • Divide up backlog of tickets based on expertise, workload

Review github Tickets

  • Will try to find tickets that will help bring Barbara up-to-speed
  • Edit and release OBO-Edit files
    • OBO-Edit provides nice visuals
    • Resolution: use the daily release OBO file, instead of the editors OBO file
  • Need SOP for avoiding ID clashes when 1 editor has multiple branches awaiting merge
    • Protege should remember IDs between Protege session, if that option is selected in preferences in Auto-generated ID section of Setting ID ranges - this preference should be checked
    • Do we need checks for potential collisions?
    • To fix this, either hand edit the file, or abandon the working branch
    • We do want to implement a check that no ID should ever have more than one label, definition, etc.