Ontology meeting 2018-06-04

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Conference Line


GH project link


Editors Discussion

Ontology Developers' workshop possibility- Geneva in late August (or maybe September)?

  • Topics
    • GH Jamboree
    • Creating necessary and sufficient logical definitions (We never got around to this in Berkeley)
    • Updating Documentation
    • GO-Rhea-Reactome alignment
    • Dealing with GH conflicts

Outstanding Pull Requests

There are now 26 open requests. We are getting better.

Regenerate Imports File

What is the status of Docker and do we have documentation on its use?

Obsoletion plugin for Protege

Does everyone have Jim's plugin? If not we should all install it and I will update the documentation. What is the status of the merge plugin?


There was a recent thread about the scope of dbxrefs in the ontology. If we are going to use the dbxrefs to seed an alignment between GO Rhea and Reactome, at least for MF, they should be 1:1.

Did this get covered last week?


  • On call: