Ontology meeting 2018-06-25: Difference between revisions

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===Project Update===
===Project Update===
Rhea-Reactome_GO alignment--- https://github.com/geneontology/go-ontology/projects/10
====Rhea-Reactome_GO alignment--- https://github.com/geneontology/go-ontology/projects/10====
*Ben is updating the xrefs between GO terms and Reactome that currently exist in the ontology
*Ben is updating the xrefs between GO terms and Reactome that currently exist in the ontology
**The vast majority of these are MFs, but it looks like there are a few to BP and CC
**The vast majority of these are MFs, but it looks like there are a few to BP and CC

Revision as of 12:17, 25 June 2018

Conference Line

Agenda

Editors Discussion

Project Update

Rhea-Reactome_GO alignment--- https://github.com/geneontology/go-ontology/projects/10


Regenerate Imports File

We continue to have issues with imported files. Although we can modify the import files, this isn't really a solution.

Obsoletion plugin for Protege

Please add you Protege versions and the plugin you have here.

Barbara- Protege 5.2.0
David- Protege 5.1.0
Harold- Protege 5.1.0

Ontology Documentation

Pascale, David and Kimberly have been working on standardizing the ontology documentation to make it align with the documentation work that Kimberly and Pascal have been doing for other areas of GO. Specifically, we have moved the official documentation to the wiki and have arranged the wiki in a way that is similar to the annotation section. We are now going through the documentation to check it for accuracy and to be sure it is up to date.


Ontology Developers' workshop possibility- Geneva in September?

  • David, Pascale and Kimberly will discuss possible dates and make a doodle poll.


GH project link

https://github.com/geneontology/go-ontology/projects/1

Minutes

  • On call: Barbara, Ben, Chris, David, Harold, Karen, Kimberly, Laurent-Philippe, Pascale

Project Update

Rhea-Reactome_GO alignment--- https://github.com/geneontology/go-ontology/projects/10

  • Ben is updating the xrefs between GO terms and Reactome that currently exist in the ontology
    • The vast majority of these are MFs, but it looks like there are a few to BP and CC
  • Chris: will these be in the go-edit file?
  • Reactome 'maintains' these, but are we importing actually importing anything?
  • The onus will be on GO to sanity check these and maintain them
  • Review of logical definitions for molecular function catalytic activity terms
    • Includes reactants, products, and stoichiometry
  • Note that the logical definition here is direction neutral (no specific L->R)