Ontology meeting 2018-11-05: Difference between revisions
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==Discussion topics== | ==Discussion topics== | ||
===Preparation for Geneva=== | |||
* Peter will give an update on the reactome xref work | |||
** Timeframe on when we can expect to get these updated for use. | |||
* Ben will give an update on the import of Reactome into GO-CAM models. | |||
** What are the issues? | |||
===Report on RO meeting=== | ===Report on RO meeting=== | ||
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===MetaCyc x reference=== | ===MetaCyc x reference=== | ||
Email by Tomer "MetaCyc2GO mapping file missing reactions" | Email by Tomer "MetaCyc2GO mapping file missing reactions" | ||
24 Oct 2018 | 24 Oct 2018 | ||
We didn't answer yet | We didn't answer yet | ||
*Wouldn't it make sense to roll this into the other xref work? | |||
===Removing property chain transports_or_maintains_localization_of o part_of -> occurs_in=== | ===Removing property chain transports_or_maintains_localization_of o part_of -> occurs_in=== | ||
Latest revision as of 10:42, 2 November 2018
Conference Line
Agenda
Meetings
Ontology Developers' workshop
- Logistics: Geneva_ontology_editors_meeting-_Dec_10-13,_2018_-_Logistics
- Planning on Dec 8th arrival/Dec 14th departure; please let Pascale know if you arrive/depart on different days
- Agenda: https://docs.google.com/document/d/1ixnmDZ75cFFdGN9H6CY5hyRkoPrCn6MvZVmERo_--Rw/edit
Discussion topics
Preparation for Geneva
- Peter will give an update on the reactome xref work
- Timeframe on when we can expect to get these updated for use.
- Ben will give an update on the import of Reactome into GO-CAM models.
- What are the issues?
Report on RO meeting
Chris + how to move forward with relations:
- GO_REL versus RO
- P2GO versus GO_REL and RO (I think P2GO uses GO_REL- mostly)
- reaction participants and incorrect inferences in Noctua (for eg transcription)
MetaCyc x reference
Email by Tomer "MetaCyc2GO mapping file missing reactions"
24 Oct 2018
We didn't answer yet
- Wouldn't it make sense to roll this into the other xref work?
Removing property chain transports_or_maintains_localization_of o part_of -> occurs_in
https://github.com/geneontology/go-ontology/pull/16546
This was not in RO, it's injected via GO (we should check we are not injecting more) How do we check that ?
Minutes
- On call: