Ontology meeting 2018-11-05

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Conference Line

Zoom: https://stanford.zoom.us/j/828418143

Agenda

Meetings

Ontology Developers' workshop

Logistics: Geneva_ontology_editors_meeting-_Dec_10-13,_2018_-_Logistics
- Planning on Dec 8th arrival/Dec 14th departure; please let Pascale know if you arrive/depart on different days
Agenda: https://docs.google.com/document/d/1ixnmDZ75cFFdGN9H6CY5hyRkoPrCn6MvZVmERo_--Rw/edit

Discussion topics

Preparation for Geneva

Peter will give an update on the reactome xref work
- Timeframe on when we can expect to get these updated for use.
Ben will give an update on the import of Reactome into GO-CAM models.
- What are the issues?

Report on RO meeting

Chris + how to move forward with relations:

GO_REL versus RO
P2GO versus GO_REL and RO (I think P2GO uses GO_REL- mostly)
reaction participants and incorrect inferences in Noctua (for eg transcription)

MetaCyc x reference

Email by Tomer "MetaCyc2GO mapping file missing reactions"

24 Oct 2018

We didn't answer yet

Wouldn't it make sense to roll this into the other xref work?

Removing property chain transports_or_maintains_localization_of o part_of -> occurs_in

https://github.com/geneontology/go-ontology/pull/16546

This was not in RO, it's injected via GO (we should check we are not injecting more) How do we check that ?

Minutes

On call:

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