Ontology meeting 2018-11-12: Difference between revisions

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(Created page with "= Conference Line = *Zoom: https://stanford.zoom.us/j/828418143 = Agenda = ==Meetings== ===Ontology Developers' workshop=== * '''Logistics''': Geneva_ontology_editors_me...")
 
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===Preparation for Geneva===
===Preparation for Geneva===
* Progress update on Reactome xrefs
* Progress update on Reactome xrefs
** https://github.com/geneontology/go-ontology/pull/16597
* Harold will use Docker to generate the Chebi import on the call.
* Harold will use Docker to generate the Chebi import on the call.
** https://github.com/geneontology/go-ontology/pull/16601
** https://github.com/geneontology/go-ontology/pull/16601

Revision as of 10:33, 12 November 2018

Conference Line

Agenda

Meetings

Ontology Developers' workshop

Discussion topics

Preparation for Geneva

Report on RO meeting

Chris + how to move forward with relations:

  • What realtion do wee need for the Rhea alignment work?
  • GO_REL versus RO
  • P2GO versus GO_REL and RO (I think P2GO uses GO_REL- mostly)
  • reaction participants and incorrect inferences in Noctua (for eg transcription)

MetaCyc x reference

Email by Tomer "MetaCyc2GO mapping file missing reactions"

24 Oct 2018

We didn't answer yet

  • Wouldn't it make sense to roll this into the other xref work?

Removing property chain transports_or_maintains_localization_of o part_of -> occurs_in

https://github.com/geneontology/go-ontology/pull/16546

This was not in RO, it's injected via GO (we should check we are not injecting more) How do we check that ?

Minutes

  • On call: