Ontology meeting 2018-11-12: Difference between revisions
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+ how to move forward with relations: | + how to move forward with relations: | ||
* What realtion do wee need for the Rhea alignment work? | * What realtion do wee need for the Rhea alignment work? | ||
** How will we handle currency chemicals? | |||
* GO_REL versus RO | * GO_REL versus RO | ||
* P2GO versus GO_REL and RO (I think P2GO uses GO_REL- mostly) | * P2GO versus GO_REL and RO (I think P2GO uses GO_REL- mostly) | ||
Latest revision as of 12:23, 12 November 2018
Conference Line
Agenda
Meetings
Ontology Developers' workshop
- Logistics: Geneva_ontology_editors_meeting-_Dec_10-13,_2018_-_Logistics
- Planning on Dec 8th arrival/Dec 14th departure; please let Pascale know if you arrive/depart on different days
- Agenda: https://docs.google.com/document/d/1ixnmDZ75cFFdGN9H6CY5hyRkoPrCn6MvZVmERo_--Rw/edit
Discussion topics
Preparation for Geneva
- Progress update on Reactome xrefs
- Harold will use Docker to generate the Chebi import on the call.
- Import of Reactome into GO-CAM models.
- What are the issues?
Report on RO meeting
Chris + how to move forward with relations:
- What realtion do wee need for the Rhea alignment work?
- How will we handle currency chemicals?
- GO_REL versus RO
- P2GO versus GO_REL and RO (I think P2GO uses GO_REL- mostly)
- reaction participants and incorrect inferences in Noctua (for eg transcription)
MetaCyc x reference
Email by Tomer "MetaCyc2GO mapping file missing reactions"
24 Oct 2018
We didn't answer yet
- Wouldn't it make sense to roll this into the other xref work?
Removing property chain transports_or_maintains_localization_of o part_of -> occurs_in
https://github.com/geneontology/go-ontology/pull/16546
This was not in RO, it's injected via GO (we should check we are not injecting more) How do we check that ?
Minutes
- On call: