Ontology meeting 2018-11-19

Conference Line

• Zoom: https://stanford.zoom.us/j/828418143

Agenda

Meetings

Ontology Developers' workshop

• Logistics: Geneva_ontology_editors_meeting-_Dec_10-13,_2018_-_Logistics
  • Planning on Dec 8th arrival/Dec 14th departure; please let Pascale know if you arrive/depart on different days
• Agenda: https://docs.google.com/document/d/1ixnmDZ75cFFdGN9H6CY5hyRkoPrCn6MvZVmERo_--Rw/edit

Discussion topics

Preparation for Geneva

• Progress update on 'currency chemicals'.
  • https://github.com/geneontology/go-ontology/pull/16597
• Harold will use Docker to generate the Chebi import on the call.
  • https://github.com/geneontology/go-ontology/pull/16601
• Import of Reactome into GO-CAM models.
  • What are the issues?

MetaCyc x reference

Email by Tomer "MetaCyc2GO mapping file missing reactions"

24 Oct 2018

We didn't answer yet

• Wouldn't it make sense to roll this into the other xref work?

Removing property chain transports_or_maintains_localization_of o part_of -> occurs_in

https://github.com/geneontology/go-ontology/pull/16546

This was not in RO, it's injected via GO (we should check we are not injecting more) How do we check that ?

Minutes

• On call: