Ontology meeting 2019-07-22
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See calendar for details
Agenda
Discussion topics
Moving to Protégé 5.5
- Instructions: Protege5_5_setup_for_GO_Eds
- Did everyone try?
- I had some weird things happen when creating and modifying synonyms last week, but I couldn't quite put a handle on what was going on. The diff file looked good but Travis was failing and when I closed and opened the file in Protege, I could then see the errors. (David)
External Resources
- I think we need an ontology editor and a software person to be responsible for the xref files. Pascale has been doing this. Is it working and does she need more resources?
- UniPathway__What are we planning to do ? https://github.com/geneontology/go-site/issues/951
The plan discussed in Geneva, Dec 2018- ontology editors meeting is to move the UniPathway to OLS and link there. What do we need to do next ? (6,910,457 annotations in QuickGO linking to UniPathway) Action item: Pascale to edit the dbxref.yaml file.
Progress on ontobot
- David and Jim have regenerated a lot of import files with ontobot, seems to be working great, David will start to assign specific people to different external ontologies. THings seem to be moving along smoothly.
- Today's CL import hasw a lot of correct, but meaningless inference.