Difference between revisions of "Ontology meeting 2019-11-04"

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===Protein x-merization BP terms===
 
===Protein x-merization BP terms===
*Merge vs obsolete
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*Will obsolete as their usage was not consistent with the intended meaning of 'protein-containing complex assembly', the term we suggested to curators to consider if they needed to re-annotate.
**Propose to obsolete as their usage was not consistent with the intended meaning of 'protein-containing complex assembly'.
+
**protein complex oligomerization
***protein complex oligomerization
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**protein homooligomerization
***protein homooligomerization
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**protein heterooligomerization
***protein heterooligomerization
+
**protein trimerization
***protein trimerization
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**protein homotrimerization
***protein homotrimerization
+
**protein heterotrimerization
***protein heterotrimerization
+
**protein tetramerization
***protein tetramerization
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**protein homotetramerization
***protein homotetramerization
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**protein heterotetramerization
***protein heterotetramerization
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**protein hexamerization
***protein hexamerization
 
  
 
===Create and implement a single 'cell/anatomical structure' relation for AEs for imports===
 
===Create and implement a single 'cell/anatomical structure' relation for AEs for imports===

Revision as of 08:26, 4 November 2019

Conference Line

See calendar for details

On call:

Agenda

Discussion topics

Pathways2GO

  • We are going to have the meeting in NYC on December 3rd and 4th.
  • Peter D is holding 5 rooms at the Washington Square Hotel for Monday, December 2nd and Tuesday, December 3rd.
  • Attendees will need to pay for rooms themselves at checkout and then get reimbursed (subcontract, if possible; main GOC grant if not).
  • If you need nights outside of those dates, please arrange independently.

Reasoning over roles

  • Chris, David, Karen - form a working group?

Protein x-merization BP terms

  • Will obsolete as their usage was not consistent with the intended meaning of 'protein-containing complex assembly', the term we suggested to curators to consider if they needed to re-annotate.
    • protein complex oligomerization
    • protein homooligomerization
    • protein heterooligomerization
    • protein trimerization
    • protein homotrimerization
    • protein heterotrimerization
    • protein tetramerization
    • protein homotetramerization
    • protein heterotetramerization
    • protein hexamerization

Create and implement a single 'cell/anatomical structure' relation for AEs for imports

Can we do any tests with the ontology to see whether this change to a single relation might cause problems if we implement it in the ontology ?


Editors -discussion tickets

  • There are currently 34 tickets with an editors-discussion label.


Other Business

https://github.com/geneontology/go-ontology/projects/1

Minutes should be recorded on individual tickets and in individual projects