Difference between revisions of "Ontology meeting 2020-06-29"

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m (Retiring gorel relations)
m (Retiring gorel relations)
 
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==Retiring gorel relations==
 
==Retiring gorel relations==
*acts on population of -> added to RO; need to update logical definitions that use this relation (cell population proliferation children and some homeostasis terms)
+
*'acts on population of' -> added to RO; need to update logical definitions that use this relation (cell population proliferation children and some homeostasis terms)
*exists during -> replace with [https://www.ebi.ac.uk/ols/ontologies/ro/properties?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_0002490 existence overlaps] but with a modified defintion?   
+
*'exists during' -> replace with [https://www.ebi.ac.uk/ols/ontologies/ro/properties?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_0002490 'existence overlaps'] but with a modified definition?   
**Currently only used in annotation extensions, but 'existence overlaps' could perhaps be used in logical definitions of some CC terms, e.g. mitotic spindle?
+
**X existence overlaps y iff the connected temporal region T1 in which the continuant X exists overlaps the connected temporal region during which y occurs
 +
**'exists during' is currently only used in annotation extensions, but 'existence overlaps' could perhaps be used in logical definitions of some CC terms, e.g. mitotic spindle?
  
 
==Other Business==
 
==Other Business==

Latest revision as of 07:17, 23 June 2020

Conference Line

See calendar for details

Agenda

Retiring gorel relations

  • 'acts on population of' -> added to RO; need to update logical definitions that use this relation (cell population proliferation children and some homeostasis terms)
  • 'exists during' -> replace with 'existence overlaps' but with a modified definition?
    • X existence overlaps y iff the connected temporal region T1 in which the continuant X exists overlaps the connected temporal region during which y occurs
    • 'exists during' is currently only used in annotation extensions, but 'existence overlaps' could perhaps be used in logical definitions of some CC terms, e.g. mitotic spindle?

Other Business

https://github.com/geneontology/go-ontology/projects/1

Minutes should be recorded on individual tickets and in individual projects