Ontology meeting 2021-04-26: Difference between revisions
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===ACTION ITEM FROM LAST CALL=== | ===ACTION ITEM FROM LAST CALL=== | ||
* Filter out Rhea xrefs that are not valid (Jim) | * Filter out Rhea xrefs that are not valid (Jim) | ||
* Should obsolete ECs be removed from obsoleted terms Y/N | |||
== Other Business == | == Other Business == | ||
Revision as of 10:56, 26 April 2021
Attendees
- Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul, Eric
- Present:
- Regrets:
Agenda
RHEA mappings
Don't hesitate to ping people if you expect something but don't see it yet - Rhea reaction requested in January was stuck in the Rhea pipeline - Anne unblocked it; it should be available in about 2 months since this is the UniProt release schedule.
UniProt SPARQL endpoint
For Chris - the UniProt SPARQL endpoint has some issue This is the right number: https://www.rhea-db.org/rhea?query=uniprot%3A* = 9,125 reactions mapped 221,135 Swiss-Prot entries (stats in SPARQL endpoint are not correct).
RHEA status and future plans
See http://wiki.geneontology.org/index.php/Ontology_meeting_2021-04-19#RHEA_status_and_future_plans Action items:
- AI We need to identify Rhea reactions linked to entries but WITHOUT GO mappings --->>> next ones to map to GO (or create reactions)
- AI: fix incorrect mappings reported by Anne - July 21, 2020
- AI: fix errors reported on Oct 1, 2019
Other items
ACTION ITEM FROM LAST CALL
- Filter out Rhea xrefs that are not valid (Jim)
- Should obsolete ECs be removed from obsoleted terms Y/N