Ontology meeting 2021-09-20: Difference between revisions

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* '''Regrets: '''   
* '''Regrets: '''   


=Announcement=
=Announcements=


=Agenda=
=Agenda=
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Suggestions
Suggestions
https://docs.google.com/document/d/15_TIWfnu2X_3CVzdcou14PyV4Ff8F9Hz8WSASi1bsaE/edit#
https://docs.google.com/document/d/15_TIWfnu2X_3CVzdcou14PyV4Ff8F9Hz8WSASi1bsaE/edit#
==Multiorganism processes==
Current pattern is
* 'modulation of process of other organism'
** 'modulation of process of other organism involved in symbiotic interaction'
*** 'modulation by symbiont of host process'
*** 'modulation by host of symbiont process'
+ suppression/induction children
Issues are :
- structure is complex
- forces to create 2 independent branches for (intra-organism) symbionts and others (snakes, frogs, etc)
- not always very relevant, usually by knowing the pair of organisms you know the relationship
- there is probably a better way to capture this information, using context (extensions) that would represent inter-organism relation(host/symbiont, prey/predator, etc)
- proposal would be to collapse all terms to “modulation/suppression/induction of x in another organism”


==Protein-containing complex localization & protein localization==
==Protein-containing complex localization & protein localization==

Revision as of 09:40, 10 September 2021

  • Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul
  • Present:
  • Regrets:

Announcements

Agenda

Aims for GOC meeting - Oct 12-14

Suggestions https://docs.google.com/document/d/15_TIWfnu2X_3CVzdcou14PyV4Ff8F9Hz8WSASi1bsaE/edit#

Multiorganism processes

Current pattern is

  • 'modulation of process of other organism'
    • 'modulation of process of other organism involved in symbiotic interaction'
      • 'modulation by symbiont of host process'
      • 'modulation by host of symbiont process'

+ suppression/induction children

Issues are : - structure is complex - forces to create 2 independent branches for (intra-organism) symbionts and others (snakes, frogs, etc) - not always very relevant, usually by knowing the pair of organisms you know the relationship - there is probably a better way to capture this information, using context (extensions) that would represent inter-organism relation(host/symbiont, prey/predator, etc) - proposal would be to collapse all terms to “modulation/suppression/induction of x in another organism”


Protein-containing complex localization & protein localization

Inconsistent 'design patterns'

Amino acid conjugates

https://github.com/geneontology/go-ontology/issues/22096


Ontology editors documentation


Imports PRs

  • Someone please take a quick look at CHEBI and CL PRs

Other Business

https://github.com/geneontology/go-ontology/projects/1