Ontology meeting 2022-01-24: Difference between revisions
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Jan 1 release was supposed to remove the links of fumaric acid, succinic acid, and malonic acid to lipid; can we start the import again? | Jan 1 release was supposed to remove the links of fumaric acid, succinic acid, and malonic acid to lipid; can we start the import again? | ||
==Design patterns== | ===Design patterns=== | ||
Implemented in ontology | Implemented in ontology | ||
see for example GO:2001077 | see for example GO:2001077 | ||
===Protein-complex organization/assembly/disassembly=== | |||
Problem with relations used in logical definition | |||
https://github.com/geneontology/go-ontology/issues/22488 | |||
RO has been changed, so that the logical issue is fixed; however do we want to use 'results in assembly of' or 'has output' for protein-containing complex assembly? This decision impacts the relations used in GO-CAM and extensions, since we aim to align them. | |||
== Other Business == | == Other Business == | ||
Revision as of 01:32, 12 January 2022
- Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul
- Present:
- Regrets:
Announcements
Agenda
Following up on previous items
ChEBI update
https://github.com/geneontology/go-ontology/pull/22092 Jan 1 release was supposed to remove the links of fumaric acid, succinic acid, and malonic acid to lipid; can we start the import again?
Design patterns
Implemented in ontology see for example GO:2001077
Protein-complex organization/assembly/disassembly
Problem with relations used in logical definition https://github.com/geneontology/go-ontology/issues/22488
RO has been changed, so that the logical issue is fixed; however do we want to use 'results in assembly of' or 'has output' for protein-containing complex assembly? This decision impacts the relations used in GO-CAM and extensions, since we aim to align them.