Oregon Reference Genomes Meeting: Difference between revisions

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Coffee
Coffee


8:30-12:00 (break 10:00-10:30)
8:30-12:00 (break 10:00-10:30) (4:30-8:00pm BST, break 6:00-6:30pm BST)


====Review GP2Protein files for consistency (Chris)====
====Files provided by the different groups (Chris)====
* [[Gp2protein]] files for consistency
* new GAF files 2.0: using new columns (16 and 17) and meaning of column 12 (type)


====Review intersection of PPOD and Panther  (Kara and Paul)====
===Metrics (Mike)===
====Progress with PAINT curation tool (Suzi and Paul)====
===Metric issues===
* How should we be measuring progress ? (Judy)


====9:30 - 10:30 Review intersection of PPOD and Panther  (Kara and Paul)====
[[Image:GO EUGENE ppod panther-2.ppt]]


====11:00- 12:30 Review pipeline for adding inferential annotations, includes tracker discussion and annotation examples (Pascale, Kara)====


12:00-1:00
[[Image:GO EUGENE 2009 pipeline1.ppt]]


Lunch - catered at meeting room


1:00-5:00 (Break 2:30-3:00)
====Review pipeline for adding inferential annotations (Pascale, Kara)====
====Discuss how to move away from Google Docs (Pascale)====
====Review Jamboree (Jim)====




====Review Jamboree (Brenley)====
[http://wiki.geneontology.org/index.php/Image:EJSummary.ppt Summary Slides] & Live Demo
# Action item: should we change to separate GONUTS pages for each ortholog with a common summary page?


====To discussion====


# Do we continue current method of prioritization for curation?
# UniProt: This month's curation targets is very large for the human set of proteins (37 human proteins to annotate which have a total of  ~7500 publications)


# Idea of having a small group go away and review a specific annotation method, meet between them and report back to the group - spending maybe a whole refgen call one on or two issues - which we could aim to completely resolve....do you think we could suggest this as a way of making progress on the consistency concerns we have? just an idea though of something to discuss


====12:00-1:00 Lunch - catered at meeting room====


=ACTION ITEMS=
#gp2protein file: (Chris, Pascale) to be renamed, and its specifications redefined
#GAF file: (Chris, Pascale) : Make sure people can send the new version of the file.
Back to [[Consortium_Meetings]]
Back to [[Consortium_Meetings]]


[[2009_Oregon_Meeting_Logistics]]
[[2009_Oregon_Meeting_Logistics]]
[[Category:Meetings]]
[[Category:Reference Genome]]

Latest revision as of 21:26, 4 March 2020

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2009_Oregon_Meeting_Logistics

Date

April 1, 2009

8:00 AM - 5:00 PM

Venue

University of Oregon, Eugene, Oregon

Erb Memorial Union (EMU), Fir Room.

Map of campus, http://map.uoregon.edu/

Map of the EMU, http://emu.uoregon.edu/map_popup.php?x=-50&y=-50&level=main&arrow=SE

Logistics

2009 Oregon Meeting Logistics

Please add yourself to the list of registrants on the Meeting Logistics Page

Agenda

Montreal Reference Genome Minutes --Please add agenda items here with your name

Wednesday April 1

8:00-8:30

Coffee

8:30-12:00 (break 10:00-10:30) (4:30-8:00pm BST, break 6:00-6:30pm BST)

Files provided by the different groups (Chris)

  • Gp2protein files for consistency
  • new GAF files 2.0: using new columns (16 and 17) and meaning of column 12 (type)

Metrics (Mike)

Metric issues

  • How should we be measuring progress ? (Judy)

9:30 - 10:30 Review intersection of PPOD and Panther (Kara and Paul)

File:GO EUGENE ppod panther-2.ppt

11:00- 12:30 Review pipeline for adding inferential annotations, includes tracker discussion and annotation examples (Pascale, Kara)

File:GO EUGENE 2009 pipeline1.ppt



Review Jamboree (Brenley)

Summary Slides & Live Demo

  1. Action item: should we change to separate GONUTS pages for each ortholog with a common summary page?

To discussion

  1. Do we continue current method of prioritization for curation?
  2. UniProt: This month's curation targets is very large for the human set of proteins (37 human proteins to annotate which have a total of ~7500 publications)
  1. Idea of having a small group go away and review a specific annotation method, meet between them and report back to the group - spending maybe a whole refgen call one on or two issues - which we could aim to completely resolve....do you think we could suggest this as a way of making progress on the consistency concerns we have? just an idea though of something to discuss

12:00-1:00 Lunch - catered at meeting room

ACTION ITEMS

  1. gp2protein file: (Chris, Pascale) to be renamed, and its specifications redefined
  2. GAF file: (Chris, Pascale) : Make sure people can send the new version of the file.

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2009_Oregon_Meeting_Logistics