Oregon Reference Genomes Meeting: Difference between revisions
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* new GAF files 2.0: using new columns (16 and 17) and meaning of column 12 (type) | * new GAF files 2.0: using new columns (16 and 17) and meaning of column 12 (type) | ||
====9: | ===Metrics (Mike)=== | ||
===Metric issues=== | |||
* How should we be measuring progress ? (Judy) | |||
====9:30 - 10:30 Review intersection of PPOD and Panther (Kara and Paul)==== | |||
[[Image:GO EUGENE ppod panther-2.ppt]] | |||
====11:00- 12:30 Review pipeline for adding inferential annotations, includes tracker discussion and annotation examples (Pascale, Kara)==== | |||
[[Image:GO EUGENE 2009 pipeline1.ppt]] | [[Image:GO EUGENE 2009 pipeline1.ppt]] | ||
====Review Jamboree (Brenley)==== | ====Review Jamboree (Brenley)==== | ||
[http://wiki.geneontology.org/index.php/Image:EJSummary.ppt Summary Slides] & Live Demo | |||
# Action item: should we change to separate GONUTS pages for each ortholog with a common summary page? | # Action item: should we change to separate GONUTS pages for each ortholog with a common summary page? | ||
====To discussion==== | ====To discussion==== | ||
# | # Do we continue current method of prioritization for curation? | ||
# UniProt: This month's curation targets is very large for the human set of proteins (37 human proteins to annotate which have a total of ~7500 publications) | |||
# Idea of having a small group go away and review a specific annotation method, meet between them and report back to the group - spending maybe a whole refgen call one on or two issues - which we could aim to completely resolve....do you think we could suggest this as a way of making progress on the consistency concerns we have? just an idea though of something to discuss | |||
====12:00-1:00 Lunch - catered at meeting room==== | |||
=ACTION ITEMS= | |||
#gp2protein file: (Chris, Pascale) to be renamed, and its specifications redefined | |||
#GAF file: (Chris, Pascale) : Make sure people can send the new version of the file. | |||
Back to [[Consortium_Meetings]] | Back to [[Consortium_Meetings]] | ||
[[2009_Oregon_Meeting_Logistics]] | [[2009_Oregon_Meeting_Logistics]] | ||
[[Category: | [[Category:Reference Genome]] |
Latest revision as of 21:26, 4 March 2020
Back to Consortium_Meetings
Date
April 1, 2009
8:00 AM - 5:00 PM
Venue
University of Oregon, Eugene, Oregon
Erb Memorial Union (EMU), Fir Room.
Map of campus, http://map.uoregon.edu/
Map of the EMU, http://emu.uoregon.edu/map_popup.php?x=-50&y=-50&level=main&arrow=SE
Logistics
Please add yourself to the list of registrants on the Meeting Logistics Page
Agenda
Montreal Reference Genome Minutes --Please add agenda items here with your name
Wednesday April 1
8:00-8:30
Coffee
8:30-12:00 (break 10:00-10:30) (4:30-8:00pm BST, break 6:00-6:30pm BST)
Files provided by the different groups (Chris)
- Gp2protein files for consistency
- new GAF files 2.0: using new columns (16 and 17) and meaning of column 12 (type)
Metrics (Mike)
Metric issues
- How should we be measuring progress ? (Judy)
9:30 - 10:30 Review intersection of PPOD and Panther (Kara and Paul)
File:GO EUGENE ppod panther-2.ppt
11:00- 12:30 Review pipeline for adding inferential annotations, includes tracker discussion and annotation examples (Pascale, Kara)
File:GO EUGENE 2009 pipeline1.ppt
Review Jamboree (Brenley)
Summary Slides & Live Demo
- Action item: should we change to separate GONUTS pages for each ortholog with a common summary page?
To discussion
- Do we continue current method of prioritization for curation?
- UniProt: This month's curation targets is very large for the human set of proteins (37 human proteins to annotate which have a total of ~7500 publications)
- Idea of having a small group go away and review a specific annotation method, meet between them and report back to the group - spending maybe a whole refgen call one on or two issues - which we could aim to completely resolve....do you think we could suggest this as a way of making progress on the consistency concerns we have? just an idea though of something to discuss
12:00-1:00 Lunch - catered at meeting room
ACTION ITEMS
- gp2protein file: (Chris, Pascale) to be renamed, and its specifications redefined
- GAF file: (Chris, Pascale) : Make sure people can send the new version of the file.
Back to Consortium_Meetings