PAINT annotation guidelines: Difference between revisions
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Panther family large and with this PAINT version could not easily get to GO annotations, so used PPOD to look at more managable chunks of the larger Panther family: | Panther family large and with this PAINT version could not easily get to GO annotations, so used PPOD to look at more managable chunks of the larger Panther family: | ||
PPOD Jaccard1673: not enough experimental annotations (only human protein UniProtKB:P00492 had exp. ann.) in this subsection of the big PANTHER family, so could not do transfer. | * [[http://ppod.princeton.edu/cgi-bin/ppod.cgi/j04/Jaccard1643|PPOD Jaccard1673]]: not enough experimental annotations (only human protein UniProtKB:P00492 had exp. ann.) in this subsection of the big PANTHER family, so could not do transfer. | ||
* [[http://ppod.princeton.edu/cgi-bin/ppod.cgi/j04/Jaccard548|PPOD Jaccard548]]: contains PGM1-3 in cerevisiae. | |||
Note: can ask E. coli to add experimental annotation based on PubMed: 12351653 | |||
== Code and Trackers == | == Code and Trackers == | ||
Revision as of 14:59, 16 March 2009
PAINT
A central repository for PAINT developer info, announcements, and technical information.
Temporary SOP while awaiting PAINT release
We can stash notes here on how we annotate the first few trees to come up with an SOP.
HPRT Family done by Kara
Based on SourceForge 1893061 and 1893082, looking at UniProtKB:P00492 In old version of PAINT, this is BookPTHR22573. Human protein UniProtKB:P00492, HPRT1, a hypoxanthine guanine phosphoribosyltransferase Panther family large and with this PAINT version could not easily get to GO annotations, so used PPOD to look at more managable chunks of the larger Panther family:
- [Jaccard1673]: not enough experimental annotations (only human protein UniProtKB:P00492 had exp. ann.) in this subsection of the big PANTHER family, so could not do transfer.
- [Jaccard548]: contains PGM1-3 in cerevisiae.
Note: can ask E. coli to add experimental annotation based on PubMed: 12351653
Code and Trackers
- PAINT: Getting the Source Code
- [ https://sourceforge.net/tracker2/?group_id=184610&atid=1126622 Bug Tracker]
- [ https://sourceforge.net/tracker2/?group_id=184610&atid=1126623 Feature Tracker]
- Browse PAINT code in SourceForge SVN repository
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