PAINT annotation guidelines: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
Line 11: Line 11:
Panther family large and with this PAINT version could not easily get to GO annotations, so used PPOD to look at more managable chunks of the larger Panther family:
Panther family large and with this PAINT version could not easily get to GO annotations, so used PPOD to look at more managable chunks of the larger Panther family:


* [[http://ppod.princeton.edu/cgi-bin/ppod.cgi/j04/Jaccard1643 PPOD Jaccard1643]]: not enough experimental annotations (only human protein UniProtKB:P00492 had exp. ann.) in this subsection of the big PANTHER family, so could not do transfer.
* [[http://ppod.princeton.edu/cgi-bin/ppod.cgi/j04/Jaccard1673 PPOD Jaccard1673]]: not enough experimental annotations (only human protein UniProtKB:P00492 had exp. ann.) in this subsection of the big PANTHER family, so could not do transfer.


* [[http://ppod.princeton.edu/cgi-bin/ppod.cgi/j04/Jaccard548 PPOD Jaccard548]]: contains PGM1-3 in cerevisiae.   
* [[http://ppod.princeton.edu/cgi-bin/ppod.cgi/j04/Jaccard548 PPOD Jaccard548]]: contains PGM1-3 in cerevisiae.   

Revision as of 15:02, 16 March 2009

PAINT

A central repository for PAINT developer info, announcements, and technical information.

Temporary SOP while awaiting PAINT release

We can stash notes here on how we annotate the first few trees to come up with an SOP.

HPRT Family done by Kara

Based on SourceForge 1893061 and 1893082, looking at UniProtKB:P00492 In old version of PAINT, this is BookPTHR22573. Human protein UniProtKB:P00492, HPRT1, a hypoxanthine guanine phosphoribosyltransferase Panther family large and with this PAINT version could not easily get to GO annotations, so used PPOD to look at more managable chunks of the larger Panther family:

  • [PPOD Jaccard1673]: not enough experimental annotations (only human protein UniProtKB:P00492 had exp. ann.) in this subsection of the big PANTHER family, so could not do transfer.

Note: can ask E. coli to add experimental annotation based on PubMed: 12351653

Code and Trackers

Return to Reference_Genome_Annotation_Project