PAINT database update pipeline

Import EXP files

• File location:

http://geneontology.org/gene-associations/*.gaf.gz

Import ontology

• File location:

http://geneontology.org/ontology/go.obo

Integration with existing PAINT annotations

• Managing differences:
  • Missing EXP evidence
  • New exp evidence

(see for ex https://github.com/pantherdb/fullgo_paint_update/issues/10)

• • Handling obsolete and merged terms

- obsolete terms: a) has a 'replaced_by' tag -> replace to the new term b) does not have a 'replaced_by' tag -> output message xxx

• • etc ?

• List of messages for automatic changed: 'Comment' ('Update comment' in PAINT interface)
  • What types of messages ? obsoletes, missing EXP... what else ?
• 'View omitted annotation information' -> generated on the fly ???
  • What types of messages ? tree changes information (missing nodes) - what else ?