Phylogenetic Annotation Project: Difference between revisions

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==Orthology determination: Data used to make orthology calls==
* Orthology determination: Data used to make orthology calls
 
** [[reference proteomes files]]
 
====[[reference proteomes files]]====
At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.
At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.


====New [[gene2geneproduct file]]====
** New [[gene2geneproduct file]]
At the April 2009 Reference Genome meeting it was decided to create a new file to replace the GP2protein file, called 'gene2geneproduct'. Specifications can be found on this page (will be added soon).  
At the April 2009 Reference Genome meeting it was decided to create a new file to replace the GP2protein file, called 'gene2geneproduct'. Specifications can be found on this page (will be added soon).  



Revision as of 08:04, 17 January 2018


PAINT : Software for tree annotation

The reference project group has developed a software to perform the annotations based on phylogenetic trees.

PAINT Curation guidelines

Pages to review


At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.

At the April 2009 Reference Genome meeting it was decided to create a new file to replace the GP2protein file, called 'gene2geneproduct'. Specifications can be found on this page (will be added soon).


Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.


Past Annotation targets