Projects stand up meeting 2021-02-17: Difference between revisions
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==Announcements== | ==Announcements== | ||
GO meeting May 3-6th: Monday May3rd is a | GO meeting May 3-6th: Monday May3rd is a bank holiday in the UK. Do we want to move the meeting to Tues-Fri? | ||
OK | |||
==Projects presentation== | ==Projects presentation== | ||
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* ORCID IDs for a group = not possible | * ORCID IDs for a group = not possible | ||
====MGI | ====Ongoing imports ==== | ||
=====MGI ===== | |||
* all annotations are in Noctua-dev, David found a few bugs. Those are being fixed, then Dustin will do another load. | |||
* expect the 'loading' part of the imports to be done within a few weeks. Then the exports will need to be checked carefully. | |||
==== | =====WB ===== | ||
Kimberly | |||
* Saving P2GO history was a requirement. Juan Carlos is in the process of importing that information | |||
[https://wiki.wormbase.org/index.php/Noctua_-_Upload_of_WB_Manual_Annotations Specifications for File Generation] | |||
* Expected date to finish the imports: 4-6 weeks {approx end of March) | |||
====ZFIN==== | |||
Sabrina/Sierra | |||
* Sierra created an import, submitted to Dustin | |||
* Sabrina will start testing the file | |||
* Sierra is setting up the import pipeline at ZFIN, updating the GAF to only contain the IEAs (Pascale: not clear what will happen to non-IEA data in P2GO such as UniProt EXP and ISS???) | |||
* Need to do a full switch very soon | |||
* Note that there are no extensions in ZFIN, so that simplifies the imports | |||
* Sierra: Some remaining issues, regarding attribution and (??) | |||
====SGD==== | |||
Suzi | |||
* Same set up as WB - protein2GO + loads of automatic annotations & PAINT | |||
* At first they wanted to keep the P2GO history but they decided ~ 2 years ago that this was no blocking | |||
* They would like a dispute system as in P2GO (right now we are using GH) | |||
* Expected switch date: not sure, they dont have a strong need to move immediately, so it depends on GO resources | |||
====Imports discussion==== | |||
* Seth: we are reaching the limit of how many groups they can work with in parallel | |||
* Kimberly GPAD export needs to be checked | |||
Did not discuss the next items | |||
==== UniProt ==== | ==== UniProt ==== | ||
* No plan yet | |||
==== VEuPathDB ==== | |||
*Got in touch this week and would like to start using Noctua | |||
*Got in touch this week and would like to start using Noctua | |||
====Other resources (Yeast pathways) ==== | ====Other resources (Yeast pathways) ==== |
Latest revision as of 11:49, 18 February 2021
Attendees
- Present:
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris
Announcements
GO meeting May 3-6th: Monday May3rd is a bank holiday in the UK. Do we want to move the meeting to Tues-Fri? OK
Projects presentation
Template:
- Next deliverables + expected date
- Progress
- Issues / blockers
Noctua Imports
GPAD import in GO pipeline
- Alex/GOA feedback: https://docs.google.com/document/d/1E9Fd38LPle2RcQgbJ9kzF3vjC81lMqSeFIQRUFPTxsE/edit#heading=h.h4t8glc2p2bp
- ORCID IDs for a group = not possible
Ongoing imports
MGI
- all annotations are in Noctua-dev, David found a few bugs. Those are being fixed, then Dustin will do another load.
- expect the 'loading' part of the imports to be done within a few weeks. Then the exports will need to be checked carefully.
WB
Kimberly
- Saving P2GO history was a requirement. Juan Carlos is in the process of importing that information
Specifications for File Generation
- Expected date to finish the imports: 4-6 weeks {approx end of March)
ZFIN
Sabrina/Sierra
- Sierra created an import, submitted to Dustin
- Sabrina will start testing the file
- Sierra is setting up the import pipeline at ZFIN, updating the GAF to only contain the IEAs (Pascale: not clear what will happen to non-IEA data in P2GO such as UniProt EXP and ISS???)
- Need to do a full switch very soon
- Note that there are no extensions in ZFIN, so that simplifies the imports
- Sierra: Some remaining issues, regarding attribution and (??)
SGD
Suzi
- Same set up as WB - protein2GO + loads of automatic annotations & PAINT
- At first they wanted to keep the P2GO history but they decided ~ 2 years ago that this was no blocking
- They would like a dispute system as in P2GO (right now we are using GH)
- Expected switch date: not sure, they dont have a strong need to move immediately, so it depends on GO resources
Imports discussion
- Seth: we are reaching the limit of how many groups they can work with in parallel
- Kimberly GPAD export needs to be checked
Did not discuss the next items
UniProt
- No plan yet
VEuPathDB
- Got in touch this week and would like to start using Noctua