Projects stand up meeting 2021-03-24: Difference between revisions
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* David and Kimberly checking latest pipeline run with Noctua GPADs run through go rules | * David and Kimberly checking latest pipeline run with Noctua GPADs run through go rules | ||
** Some changes were needed after the initial run to update file names so consuming groups' pipelines didn't need to be changed | ** Some changes were needed after the initial run to update file names so consuming groups' pipelines didn't need to be changed | ||
* David would like to check MGI round trip on Monday; if all goes well and there are no other issues, we | * David would like to check MGI round trip on Monday; if all goes well and there are no other issues, we could have a versioned release next week? Or do we want to release this week? | ||
* If Pascale is out next week, who would QC the versioned release if we wait? | |||
==Pathways2GO manuscript== | ==Pathways2GO manuscript== |
Revision as of 08:59, 24 March 2021
Attendees
- Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris + Peter, Dustin
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris
Announcements
Pascale off next week; Kimberly off the week after
GOC meeting
In about 1 month: do we have anything specific we want to deliver?
Projects presentation
Template:
- Next deliverables + expected date
- Progress
- Issues / blockers
March GO release/GAF2.2 migration
Status
- David and Kimberly checking latest pipeline run with Noctua GPADs run through go rules
- Some changes were needed after the initial run to update file names so consuming groups' pipelines didn't need to be changed
- David would like to check MGI round trip on Monday; if all goes well and there are no other issues, we could have a versioned release next week? Or do we want to release this week?
- If Pascale is out next week, who would QC the versioned release if we wait?
Pathways2GO manuscript
- Resubmitted to Bioinformatics
MGI, WB, ZFIN import
- Status of import files
- Status of emitted GPAD files
- gpad diff tool
- Would like more discussion on the intended scope and usage of a gpad diff tool
- There may be slightly different requirements for Zfin vs MGI vs WB vs other groups
- Try to write one diff script to rule them all upfront or iterate as needed?
- Given the answer to the above question, where does this work fit into our current project priorities?
- gpad diff tool
Missing file from SVN
2 helpdesk emails (including Paul Pavlidis) request: http://release.geneontology.org/latest-termdb/go_daily-termdb.rdf-xml.gz see https://github.com/geneontology/helpdesk/issues/302 What was this file? Should we try to restore it?
ART1.0/Noctua3.0 plan
Any other ongoing project
Subsets creation documentation
https://docs.google.com/document/d/1mh-xrwAWGqOeviNsJxQ1m619uL4lgrRggYO6msntQpk/edit?ts=605a3373
Next sprint
https://docs.google.com/document/d/1AIuq8xxgV6bZZHFbXW-s3ln8PdUfZGNUuZcNFX1n7eQ/edit#