Projects stand up meeting 2021-03-24
Attendees
- Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris + Peter, Dustin
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris
Projects presentation
Template:
- Next deliverables + expected date
- Progress
- Issues / blockers
March GO release/GAF2.2 migration
Status
- David and Kimberly checking latest pipeline run with Noctua GPADs run through go rules
- Some changes were needed after the initial run to update file names so consuming groups' pipelines didn't need to be changed
- David will check MGI round trip on Monday; if all goes well and there are no other issues, we'll aim for production release next week
Pathways2GO manuscript
- Resubmitted to Bioinformatics
MGI, WB, ZFIN import
- Status of import files
- Status of emitted GPAD files
- gpad diff tool
- Would like more discussion on the intended scope and usage of a gpad diff tool
- There may be slightly different requirements for Zfin vs MGI vs WB vs other groups
- Try to write one diff script to rule them all upfront or iterate as needed?
- Given the answer to the above question, where does this work fit into our current project priorities?
- gpad diff tool
Missing file from SVN
2 helpdesk emails (including Paul Pavlidis) request: http://release.geneontology.org/latest-termdb/go_daily-termdb.rdf-xml.gz see https://github.com/geneontology/helpdesk/issues/302 What was this file? Should we try to restore it?
ART1.0/Noctua3.0 plan
Any other ongoing project
Next sprint
https://docs.google.com/document/d/1AIuq8xxgV6bZZHFbXW-s3ln8PdUfZGNUuZcNFX1n7eQ/edit#