Projects stand up meeting 2021-07-07: Difference between revisions
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==SynGO Annotations== | ==SynGO Annotations== | ||
* There are some data issues with these annotations | * There are some data issues with these annotations | ||
** Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726 | ** ''Use of an obsolete ECO code'' - https://github.com/geneontology/noctua/issues/726 | ||
*** It would be good to at least update the obsolete ECO code in the GO-CAMs | *** It would be good to at least update the obsolete ECO code in the GO-CAMs | ||
** Use of IMP for CC in possibly a different way than standard annotations - RGD has asked about this | ** ''Use of IMP for CC in possibly a different way than standard annotations'' - RGD has asked about this | ||
** Uniprot IDs from SYNGO models aren't in NEO - https://github.com/geneontology/noctua/issues/693 | ** ''Uniprot IDs from SYNGO models aren't in NEO'' - https://github.com/geneontology/noctua/issues/693 | ||
** Harmonize SynGO's use of UniProt identifiers and MOD identifiers - https://github.com/geneontology/go-site/issues/1568 | ** ''Harmonize SynGO's use of UniProt identifiers and MOD identifiers'' - https://github.com/geneontology/go-site/issues/1568 | ||
** Try contacting SynGO about this before updating | ** Try contacting SynGO about this before updating any .ttl files in the noctua-models repo? | ||
** Other places SynGO data resides, e.g. Protein2GO? | *** Other places SynGO data resides, e.g. Protein2GO? | ||
* Where does all of this stand in our project priority list? | * Where does all of this stand in our project priority list? | ||
* Wait until we've finished up other projects? | * Wait until we've finished up other projects? | ||
Revision as of 10:35, 7 July 2021
Attendees
- Present:
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Announcements
GOC meeting dates: Oct 13-15 (Wed to Friday)
Discussion points
Ongoing projects
Urgent bug
NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 Jim needed to help fix this
This seems to be fixed.
GAF2.2 Migration
- Can we close this project?
- Are all GO upstreams in compliance?
- https://github.com/orgs/geneontology/projects/51
SynGO Annotations
- There are some data issues with these annotations
- Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
- It would be good to at least update the obsolete ECO code in the GO-CAMs
- Use of IMP for CC in possibly a different way than standard annotations - RGD has asked about this
- Uniprot IDs from SYNGO models aren't in NEO - https://github.com/geneontology/noctua/issues/693
- Harmonize SynGO's use of UniProt identifiers and MOD identifiers - https://github.com/geneontology/go-site/issues/1568
- Try contacting SynGO about this before updating any .ttl files in the noctua-models repo?
- Other places SynGO data resides, e.g. Protein2GO?
- Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
- Where does all of this stand in our project priority list?
- Wait until we've finished up other projects?
MOD imports
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra
Ontology
- ATPase jamboree
- Next: GO-Rhea alignment - week of July 26
- Participants + goals:
Priorities
- GPAD project
- NEO
GOC meeting Action Points
- Are any of these items high priority?