Projects stand up meeting 2021-07-07: Difference between revisions
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== TAIR Data Submission == | == TAIR Data Submission == | ||
* Any more feedback for Tanya? | * Any more feedback for Tanya? | ||
** We replied to her suggestion, the ball is in her court | |||
=Ongoing projects= | =Ongoing projects= | ||
| Line 42: | Line 43: | ||
* [https://github.com/orgs/geneontology/projects/52 GPAD output] | * [https://github.com/orgs/geneontology/projects/52 GPAD output] | ||
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra | Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra | ||
** Jim will be assigned the tickets with the 'imports' label; this is high priority | |||
** Sierra will be tagged, so she can be trained | |||
* [https://github.com/orgs/geneontology/projects/58 MGI] -> waiting for GPAD | |||
* [https://github.com/orgs/geneontology/projects/58 MGI] | * [https://github.com/orgs/geneontology/projects/59 WormBase] -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces | ||
* [https://github.com/orgs/geneontology/projects/59 WormBase] | |||
* [https://github.com/orgs/geneontology/projects/60 XenBase] | * [https://github.com/orgs/geneontology/projects/60 XenBase] | ||
* [https://github.com/orgs/geneontology/projects/61 SGD] (no tickets yet) | * [https://github.com/orgs/geneontology/projects/61 SGD] (no tickets yet) | ||
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https://docs.google.com/document/d/1Ki1xnWU29OkQZSScZ-ge-U_90Ql3-Ni5HbAvFktephs/edit# | https://docs.google.com/document/d/1Ki1xnWU29OkQZSScZ-ge-U_90Ql3-Ni5HbAvFktephs/edit# | ||
==Priorities | ==Noctua== | ||
* [https://github.com/orgs/geneontology/projects/65 Noctua enhancements, bug fixes, user support 6/2021 - 12/2021] | |||
Tremayne, Laurent-Philippe, Kimberly, David | |||
=Priorities= | |||
* GPAD project | * GPAD project | ||
* NEO | * NEO : fix/refactor to make more robust and add more species/chains(?) (and maybe automate some parts like periodic reloading) | ||
** '''NEXT: schedule a planning meeting''' | |||
https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648 | * Other priorities: https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648 | ||
==GOC meeting Action Points== | ==GOC meeting Action Points== | ||
Latest revision as of 11:55, 7 July 2021
Attendees
- Present: Huaiyu, Kimberly, Pascale, Seth, David, Chris, Paul
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Announcements
GOC meeting dates: Oct 13-15 (Wed to Friday)
Discussion points
TAIR Data Submission
- Any more feedback for Tanya?
- We replied to her suggestion, the ball is in her court
Ongoing projects
Urgent bug
NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 Jim needed to help fix this
This seems to be fixed.
GAF2.2 Migration
- Can we close this project?
- Are all GO upstreams in compliance?
- https://github.com/orgs/geneontology/projects/51
SynGO Annotations
- There are some data issues with these annotations
- Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
- It would be good to at least update the obsolete ECO code in the GO-CAMs
- Use of IMP for CC in possibly a different way than standard annotations - RGD has asked about this
- Uniprot IDs from SYNGO models aren't in NEO - https://github.com/geneontology/noctua/issues/693
- Harmonize SynGO's use of UniProt identifiers and MOD identifiers - https://github.com/geneontology/go-site/issues/1568
- Try contacting SynGO about this before updating any .ttl files in the noctua-models repo?
- Other places SynGO data resides, e.g. Protein2GO?
- Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
- Where does all of this stand in our project priority list?
- Wait until we've finished up other projects?
- Add to the existing project but don't start on the work yet?
- POSTPONE DISCUSSION UNTIL DUSTIN IS BACK
MOD imports
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra
- Jim will be assigned the tickets with the 'imports' label; this is high priority
- Sierra will be tagged, so she can be trained
- MGI -> waiting for GPAD
- WormBase -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
- XenBase
- SGD (no tickets yet)
- ZFIN -> no project; all errors and bugs have been corrected; need to roll out
Ontology
- ATPase jamboree
- Next: GO-Rhea alignment - week of July 26
- Participants + goals:
https://docs.google.com/document/d/1Ki1xnWU29OkQZSScZ-ge-U_90Ql3-Ni5HbAvFktephs/edit#
Noctua
Tremayne, Laurent-Philippe, Kimberly, David
Priorities
- GPAD project
- NEO : fix/refactor to make more robust and add more species/chains(?) (and maybe automate some parts like periodic reloading)
- NEXT: schedule a planning meeting
- Other priorities: https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648
GOC meeting Action Points
- Are any of these items high priority?