Projects stand up meeting 2021-07-07: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
 
(22 intermediate revisions by 2 users not shown)
Line 1: Line 1:
==Attendees==
==Attendees==
* Present:  
* Present: Huaiyu, Kimberly, Pascale, Seth, David, Chris, Paul
* Regrets:  
* Regrets:  
* Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
* Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Line 8: Line 8:


=Discussion points=
=Discussion points=
== TAIR Data Submission ==
* Any more feedback for Tanya?
** We replied to her suggestion, the ball is in her court


=Ongoing projects=
=Ongoing projects=
Line 22: Line 25:
*https://github.com/orgs/geneontology/projects/51
*https://github.com/orgs/geneontology/projects/51


==SynGO Annotations==
* There are some data issues with these annotations
** ''Use of an obsolete ECO code'' - https://github.com/geneontology/noctua/issues/726
*** It would be good to at least update the obsolete ECO code in the GO-CAMs
** ''Use of IMP for CC in possibly a different way than standard annotations'' - RGD has asked about this
** ''Uniprot IDs from SYNGO models aren't in NEO'' - https://github.com/geneontology/noctua/issues/693
** ''Harmonize SynGO's use of UniProt identifiers and MOD identifiers'' - https://github.com/geneontology/go-site/issues/1568
** Try contacting SynGO about this before updating any .ttl files in the noctua-models repo?
*** Other places SynGO data resides, e.g. Protein2GO?
* Where does all of this stand in our project priority list?
* Wait until we've finished up other projects?
* Add to the [https://github.com/orgs/geneontology/projects/37 existing project] but don't start on the work yet?
* '''POSTPONE DISCUSSION UNTIL DUSTIN IS BACK'''


==MOD imports==
==MOD imports==
* [https://github.com/orgs/geneontology/projects/52 GPAD output]
* [https://github.com/orgs/geneontology/projects/52 GPAD output]
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra
** Jim will be assigned the tickets with the 'imports' label; this is high priority
** Sierra will be tagged, so she can be trained


 
* [https://github.com/orgs/geneontology/projects/58 MGI] -> waiting for GPAD
* [https://github.com/orgs/geneontology/projects/58 MGI]
* [https://github.com/orgs/geneontology/projects/59 WormBase] -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
* [https://github.com/orgs/geneontology/projects/59 WormBase]
* [https://github.com/orgs/geneontology/projects/60 XenBase]
* [https://github.com/orgs/geneontology/projects/60 XenBase]
* [https://github.com/orgs/geneontology/projects/61 SGD] (no tickets yet)
* [https://github.com/orgs/geneontology/projects/61 SGD] (no tickets yet)
* ZFIN -> no project; all errors and bugs have been corrected; need to roll out


==Ontology==
==Ontology==
* [https://github.com/orgs/geneontology/projects/64 ATPase jamboree ]
* [https://github.com/orgs/geneontology/projects/64 ATPase jamboree ]
* Next: GO-Rhea alignment - week of July 26
* Next: GO-Rhea alignment - week of July 26
** Participants + goals:
** Participants + goals:  
https://docs.google.com/document/d/1Ki1xnWU29OkQZSScZ-ge-U_90Ql3-Ni5HbAvFktephs/edit#


==Noctua==
* [https://github.com/orgs/geneontology/projects/65 Noctua enhancements, bug fixes, user support 6/2021 - 12/2021]
Tremayne, Laurent-Philippe, Kimberly, David


==Priorities==
=Priorities=
* GPAD project
* GPAD project
* NEO  
* NEO : fix/refactor to make more robust and add more species/chains(?) (and maybe automate some parts like periodic reloading)
** '''NEXT: schedule a planning meeting'''


https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648
* Other priorities: https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648


==GOC meeting Action Points==
==GOC meeting Action Points==

Latest revision as of 11:55, 7 July 2021

Attendees

  • Present: Huaiyu, Kimberly, Pascale, Seth, David, Chris, Paul
  • Regrets:
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris

Announcements

GOC meeting dates: Oct 13-15 (Wed to Friday)

Discussion points

TAIR Data Submission

  • Any more feedback for Tanya?
    • We replied to her suggestion, the ball is in her court

Ongoing projects

Urgent bug

NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 Jim needed to help fix this

This seems to be fixed.

GAF2.2 Migration

SynGO Annotations

  • POSTPONE DISCUSSION UNTIL DUSTIN IS BACK

MOD imports

Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra

    • Jim will be assigned the tickets with the 'imports' label; this is high priority
    • Sierra will be tagged, so she can be trained
  • MGI -> waiting for GPAD
  • WormBase -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
  • XenBase
  • SGD (no tickets yet)
  • ZFIN -> no project; all errors and bugs have been corrected; need to roll out

Ontology

https://docs.google.com/document/d/1Ki1xnWU29OkQZSScZ-ge-U_90Ql3-Ni5HbAvFktephs/edit#

Noctua

Tremayne, Laurent-Philippe, Kimberly, David

Priorities

  • GPAD project
  • NEO : fix/refactor to make more robust and add more species/chains(?) (and maybe automate some parts like periodic reloading)
    • NEXT: schedule a planning meeting

GOC meeting Action Points

action items

  • Are any of these items high priority?
Retrieved from "https://wiki.geneontology.org/index.php?title=Projects_stand_up_meeting_2021-07-07&oldid=80545"