Projects stand up meeting 2021-07-07

Attendees

• Present:
• Regrets:
• Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris

Announcements

GOC meeting dates: Oct 13-15 (Wed to Friday)

Ongoing projects

Urgent bug

NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 Jim needed to help fix this

This seems to be fixed.

GAF2.2 Migration

• Can we close this project?
• Are all GO upstreams in compliance?
• https://github.com/orgs/geneontology/projects/51

SynGO Annotations

• There are some data issues with these annotations
  • Use of an obsolete ECO code
  • Use of IMP for CC in possibly a different way than standard annotations - RGD has asked about this
  • It would be good to at least update the obsolete ECO code in the GO-CAMs
  • Try contacting SynGO about this before updating the .ttl files in the noctua-models repo?
  • Other places SynGO data resides, e.g. Protein2GO?

MOD imports

• GPAD output

Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra

• MGI
• WormBase
• XenBase
• SGD (no tickets yet)

Ontology

• ATPase jamboree
• Next: GO-Rhea alignment - week of July 26
  • Participants + goals:

Priorities

• GPAD project
• NEO

https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648

GOC meeting Action Points

action items

• Are any of these items high priority?