Projects stand up meeting 2021-07-07
Attendees
- Present: Huaiyu, Kimberly, Pascale, Seth, David, Chris, Paul
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Announcements
GOC meeting dates: Oct 13-15 (Wed to Friday)
Discussion points
TAIR Data Submission
- Any more feedback for Tanya?
Ongoing projects
Urgent bug
NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 Jim needed to help fix this
This seems to be fixed.
GAF2.2 Migration
- Can we close this project?
- Are all GO upstreams in compliance?
- https://github.com/orgs/geneontology/projects/51
SynGO Annotations
- There are some data issues with these annotations
- Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
- It would be good to at least update the obsolete ECO code in the GO-CAMs
- Use of IMP for CC in possibly a different way than standard annotations - RGD has asked about this
- Uniprot IDs from SYNGO models aren't in NEO - https://github.com/geneontology/noctua/issues/693
- Harmonize SynGO's use of UniProt identifiers and MOD identifiers - https://github.com/geneontology/go-site/issues/1568
- Try contacting SynGO about this before updating any .ttl files in the noctua-models repo?
- Other places SynGO data resides, e.g. Protein2GO?
- Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
- Where does all of this stand in our project priority list?
- Wait until we've finished up other projects?
- Add to the existing project but don't start on the work yet?
- POSTPONE DISCUSSION UNTIL DUSTIN IS BACK
MOD imports
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra
- MGI
- WormBase
- XenBase
- SGD (no tickets yet)
- ZFIN -> no project; all errors and bugs have been corrected; need to roll out
Ontology
- ATPase jamboree
- Next: GO-Rhea alignment - week of July 26
- Participants + goals:
https://docs.google.com/document/d/1Ki1xnWU29OkQZSScZ-ge-U_90Ql3-Ni5HbAvFktephs/edit#
Priorities
- GPAD project
- NEO : fix/refactor to make more robust and add more species/chains(?) (and maybe automate some parts like periodic reloading)
GOC meeting Action Points
- Are any of these items high priority?