Projects stand up meeting 2021-07-07

Attendees

• Present: Huaiyu, Kimberly, Pascale, Seth, David, Chris, Paul
• Regrets:
• Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris

Announcements

GOC meeting dates: Oct 13-15 (Wed to Friday)

Discussion points

TAIR Data Submission

• Any more feedback for Tanya?
  • We replied to her suggestion, the ball is in her court

Ongoing projects

Urgent bug

NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 Jim needed to help fix this

This seems to be fixed.

GAF2.2 Migration

• Can we close this project?
• Are all GO upstreams in compliance?
• https://github.com/orgs/geneontology/projects/51

SynGO Annotations

• There are some data issues with these annotations
  • Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
    • It would be good to at least update the obsolete ECO code in the GO-CAMs
  • Use of IMP for CC in possibly a different way than standard annotations - RGD has asked about this
  • Uniprot IDs from SYNGO models aren't in NEO - https://github.com/geneontology/noctua/issues/693
  • Harmonize SynGO's use of UniProt identifiers and MOD identifiers - https://github.com/geneontology/go-site/issues/1568
  • Try contacting SynGO about this before updating any .ttl files in the noctua-models repo?
    • Other places SynGO data resides, e.g. Protein2GO?
• Where does all of this stand in our project priority list?
• Wait until we've finished up other projects?
• Add to the existing project but don't start on the work yet?

• POSTPONE DISCUSSION UNTIL DUSTIN IS BACK

MOD imports

• GPAD output

Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra

• • Jim will be assigned the tickets with the 'imports' label; this is high priority
  • Sierra will be tagged, so she can be trained

• MGI -> waiting for GPAD
• WormBase -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
• XenBase
• SGD (no tickets yet)
• ZFIN -> no project; all errors and bugs have been corrected; need to roll out

Ontology

• ATPase jamboree
• Next: GO-Rhea alignment - week of July 26
  • Participants + goals:

https://docs.google.com/document/d/1Ki1xnWU29OkQZSScZ-ge-U_90Ql3-Ni5HbAvFktephs/edit#

Noctua

• Noctua enhancements, bug fixes, user support 6/2021 - 12/2021

Tremayne, Laurent-Philippe, Kimberly, David

Priorities

• GPAD project
• NEO : fix/refactor to make more robust and add more species/chains(?) (and maybe automate some parts like periodic reloading)
  • NEXT: schedule a planning meeting

• Other priorities: https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648

GOC meeting Action Points

action items

• Are any of these items high priority?