Projects stand up meeting 2021-07-21
Attendees
- Present:
- Regrets: Pascale
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Announcements
GOC meeting dates: Oct 13-15 (Wed to Friday)
Ongoing projects
SynGO Annotations
- There are some data issues with these annotations
- Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
- It would be good to at least update the obsolete ECO code in the GO-CAMs
- Use of IMP for CC in possibly a different way than standard annotations - RGD has asked about this
- Uniprot IDs from SYNGO models aren't in NEO - https://github.com/geneontology/noctua/issues/693
- Harmonize SynGO's use of UniProt identifiers and MOD identifiers - https://github.com/geneontology/go-site/issues/1568
- Try contacting SynGO about this before updating any .ttl files in the noctua-models repo?
- Other places SynGO data resides, e.g. Protein2GO?
- Use of an obsolete ECO code - https://github.com/geneontology/noctua/issues/726
- Where does all of this stand in our project priority list?
- Wait until we've finished up other projects?
- Add to the existing project but don't start on the work yet?
- Invite Dustin to a call?
- More generally, people are asking about importing annotations
- What formats?
- Documentation?
- POSTPONE DISCUSSION UNTIL DUSTIN IS BACK
MOD imports
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra
- Jim assigned the tickets with the 'imports' label; this is high priority
- Sierra will be tagged, so she can be trained
- We need to schedule Jim's time for this - post RHEA jamboree?
- MGI -> waiting for GPAD
- WormBase -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
- XenBase
- SGD (no tickets yet)
- ZFIN -> no project; all errors and bugs have been corrected; need to roll out
Ontology
- ATPase jamboree
- Next: GO-Rhea alignment - week of July 26
- Participants + goals:
https://docs.google.com/document/d/1Ki1xnWU29OkQZSScZ-ge-U_90Ql3-Ni5HbAvFktephs/edit#
Noctua
Tremayne, Laurent-Philippe, Kimberly, David
Priorities
- GPAD project
- NEO : fix/refactor to make more robust and add more species/chains(?) (and maybe automate some parts like periodic reloading)
- NEXT: schedule a planning meeting
- Other priorities: https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648
GOC meeting Action Points
- Are any of these items high priority?