Projects stand up meeting 2021-09-08: Difference between revisions

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===MOD imports===
===MOD imports===
* [https://github.com/orgs/geneontology/projects/52 GPAD output]
* [https://github.com/orgs/geneontology/projects/52 GPAD output]
** 2 / 3 tickets are solved on dev, can go to production
** 3rd ticket should be easy to fix
** Issue with annotations based on PRO isoforms, some annotations are not coming out (blocking)
** Otherwise things look good
* [https://github.com/orgs/geneontology/projects/58 MGI]  
* [https://github.com/orgs/geneontology/projects/58 MGI]  
* [https://github.com/orgs/geneontology/projects/59 WormBase] -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
* [https://github.com/orgs/geneontology/projects/59 WormBase] -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces

Revision as of 11:28, 8 September 2021

Attendees

  • Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris
  • Regrets: Huaiyu
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris

Announcements

  • GOC meeting dates: Oct 12-14 (Tues to Thurs)
  • Paul sabbatical starts ~ Oct 1- March 1

Discussion points

Original Ashburner GO white paper

See Barry Smith's email http://biomirror.aarnet.edu.au/biomirror/geneontology/docs/gene_ontology_discussion.html http://www.ebi.ac.uk/~ashburn/ontology_discussion.html

  • ACTION POINT add to the website > about
  • ACTION POINT(Seth) convert to pdf and submit to zenodo

Status of GO website addresses

http:geneontology.org/go-cam currently redirects to https://geneontology.cloud/home geneontology.cloud -> will be changed to correct link http:geneontology.org/go-cam

Citing GO-CAM models?

  • Can cite GO-CAM paper
  • Use cases: citing models: there is a stable model URI [Suzi: to document on the website]
  • Using image: normal GO citing policy

GO-ECO alignment

https://github.com/evidenceontology/evidenceontology/issues/251 Action Set up a meeting/small workshop with Michelle to resolve this Chris, Kimberly, David, others?

Projects update

MOD imports

  • GPAD output
    • 2 / 3 tickets are solved on dev, can go to production
    • 3rd ticket should be easy to fix
    • Issue with annotations based on PRO isoforms, some annotations are not coming out (blocking)
    • Otherwise things look good
  • MGI
  • WormBase -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
  • XenBase
  • SGD (no tickets yet)
  • Next: import from P2GO; will probably need fine tuning with Alex, testing WB + SGD, and maybe Dustin will need to adjust some code

New taxon contraints

https://docs.google.com/document/d/18JlF8l5NyrVs5rMzXz6d8fq4HXZOdQUk0ajCgo5rmus/edit

Other priorities

https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=1697332900