Projects stand up meeting 2021-09-08
Attendees
- Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris
- Regrets: Huaiyu
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Announcements
- GOC meeting dates: Oct 12-14 (Tues to Thurs)
- Paul sabbatical starts ~ Oct 1- March 1
Discussion points
Original Ashburner GO white paper
See Barry Smith's email http://biomirror.aarnet.edu.au/biomirror/geneontology/docs/gene_ontology_discussion.html http://www.ebi.ac.uk/~ashburn/ontology_discussion.html
- ACTION POINT add to the website > about
- ACTION POINT(Seth) convert to pdf and submit to zenodo
Status of GO website addresses
http:geneontology.org/go-cam currently redirects to https://geneontology.cloud/home geneontology.cloud -> will be changed to correct link http:geneontology.org/go-cam
Citing GO-CAM models?
- Can cite GO-CAM paper
- Use cases: citing models: there is a stable model URI [Suzi: to document on the website]
- Using image: normal GO citing policy
GO-ECO alignment
https://github.com/evidenceontology/evidenceontology/issues/251 Action Set up a meeting/small workshop with Michelle to resolve this Chris, Kimberly, David, others?
Projects update
MOD imports
- GPAD output
- 2 / 3 tickets are solved on dev, can go to production
- 3rd ticket should be easy to fix
- Issue with annotations based on PRO isoforms, some annotations are not coming out (blocking)
- Otherwise things look good
- MGI
- Next is for Lori to load and check that all is OK on MGI's side
- WormBase -> waiting for GPAD and round trip before asking Alex changed to the GPAD export he produces
- First imported WB annotations, look good -> these can go into production, WB will pick these up from the GPAD output
- Next: import from P2GO; will probably need fine tuning with Alex, testing WB + SGD, and maybe Dustin will need to adjust some code
- Delivery: estimate weeks - or by the end of this year
- XenBase
- SGD (no tickets yet)
New taxon contraints
https://docs.google.com/document/d/18JlF8l5NyrVs5rMzXz6d8fq4HXZOdQUk0ajCgo5rmus/edit