Projects update meeting 2022-06-01
Jump to navigation
Jump to search
Attendees
- Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
- Present:
Checking on a possible uesr
- Does anyone know of a Samridhi Dev? I got a request to share the ART documentation, but don't see this person in the users.yaml file
Task Matrix
Currently active projects
Project name | Link to GH project | Resources: PI, PO, TL, Other resources | Next review | Follow up review | Aligned with Matrix? | Notes |
---|---|---|---|---|---|---|
Software improvement | ||||||
Software improvements : GO API | GO API | PI: Chris, PO:??, TL: Seth, Others: Sierra | Yes | Project continues in May - schedule next review + estimate date of completion | ||
Software improvements : pipeline cleanup | PLANNING Pipeline cleanup | PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay? | Status still Planning | |||
Alliance software support | Alliance software support | PI: , PO:??, TL: Seth, Others: | ||||
Noctua improvement and maintenance | Noctua 2021 | PI: Paul , PO: Kimberly, TL: Seth, Others: Tremayne, Jim | ||||
GO_REFs | GO_REFs | PI: Chris, PO: Chris, TL: Seth, Others: Sujay, some of Sierra | Was supposed to end in April; make new estimate of time needed | |||
Ongoing data QC and pipeline maintenance | Ongoing data QC and pipeline maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
Essential software maintenance | Essential software maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
Remove some main roadblocks for GO-CAM models curation (Aim 2) | ||||||
NEO load of new sequences | NEO load GH project | PI: Chris, PO: Pascale , TL:, Seth Others: Sujay | ||||
Noctua Visual editor (Tremayne) - V1.0 done | Visual Pathway editor GH project | PI: Paul, PO: Paul, TL:, Others: Tremayne | Yes | Need to complete documentation (Pascale + Kimberly, David, Paul, Patrick proof read) | ||
Model copy | PLANNED Old Shallow Model Copy GH project | PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne | Yes ? | Is this Jim's next priority? | ||
Simple version of automation of Noctua updates | Noctua updates | PI: Chris, PO: TBD, TL: Seth, Others: | ||||
Complete MOD imports (Aim 2) | ||||||
MOD imports | MGI - WB - SGD | PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin | ||||
Integrate YeastPathways in GO Cam | Yeast Pathways | PI: Paul, PO: , TL: Dustin, Others: | ||||
Ontology (Aim 1) | ||||||
PI: , PO: , TL: , Others: | ||||||
Outreach/usability (Aim 3) | ||||||
PI: , PO: , TL: , Others: | ||||||
Projects to prioritize | ||||||
Switch to “species” for download outputs | PLANNED Improved Downloads ???? | PI: , PO:, TL:, Others: | ||||
Noctua output | PLANNING GPAD outputs- Complex Models and Redundancy Filtering | PI: Chris, PO: Kimberly, TL:?, Others: Jim | ||||
Next Noctua tasks | ||||||
Annotation Extension Relation Review | Annotation Extension Relation Review | PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale | ||||
ECO-GO Alignment | ECO-GO Alignment | |||||
GO rules, including missing valid rules from the report | ||||||
Phylogenetic taxon constraints | TC GH project - ontology repo | PI: Paul, PO: Pascale, TL: Jim, Others: | ||||
Noctua training material | Noctua training Project | PI: Mike , PO: Suzi, TL: NA, Others: David | Develop new training materials based on MGI and ZFIN training | |||
Other projects |