Proposal for fate of "transcription" and corresponding regulation terms: Difference between revisions
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*: - GO:0001071 '''nucleic acid binding transcription factor activity''' | *: - GO:0001071 '''nucleic acid binding transcription factor activity''' | ||
*: These are both new terms that have been added recently as part of the transcription overhaul. I put these in thinking only of DNA-dependent transcription. However, at the moment, nothing about the names or definitions of these terms distinguishes between DNA-dependent or RNA-dependent processes. If anyone knowledgeable about the RNA-dependent process thinks these functions would be needed for the RNA-dependent process, we can make these general terms and create new terms that are subtypes. If no one speaks up though, I might be inclined to just make these terms specific to DNA-dependent transcription since I know almost nothing about RNA-dependent transcription. | *: These are both new terms that have been added recently as part of the transcription overhaul. I put these in thinking only of DNA-dependent transcription. However, at the moment, nothing about the names or definitions of these terms distinguishes between DNA-dependent or RNA-dependent processes. If anyone knowledgeable about the RNA-dependent process thinks these functions would be needed for the RNA-dependent process, we can make these general terms and create new terms that are subtypes. If no one speaks up though, I might be inclined to just make these terms specific to DNA-dependent transcription since I know almost nothing about RNA-dependent transcription. | ||
*: <font color="red">removing part_of relationships for now, but think we NEED to make these terms specific to the DNA-dependent form of transcription and make new part_of's</font> | |||
* cross product relationships to be changed to use "transcription, DNA-dependent" <font color="red">done</font> | * cross product relationships to be changed to use "transcription, DNA-dependent" <font color="red">done</font> | ||
*: - GO:0034401 '''regulation of transcription by chromatin organization''' | *: - GO:0034401 '''regulation of transcription by chromatin organization''' |
Revision as of 19:07, 17 March 2011
There are a couple problems with the term transcription (GO:0006350), and with its three associated regulation terms:
- GO:0006350 transcription
- GO:0045449 regulation of transcription
- GO:0045941 positive regulation of transcription
- GO:0016481 negative regulation of transcription
This page contains the 2 possible options for resolution followed by a detailed discussion of the issues and some supporting data.
Proposal
There are 2 possible ways to go with these terms:
- Merge the transcription terms into the 4 corresponding transcription, DNA-dependent terms (pairs shown below). Since we think that essentially all of the annotations should have been made to the more granular transcription, DNA-dependent terms, we feel this might be the conservative approach with respect to annotations.
- Obsolete the 4 transcription and suggest replacement terms. Since the vast majority of annotations are IEAs, which would be fixed by fixing the mappings rather than by having to manually evaluate each annotation, perhaps the group would prefer to go this way rather than risk inappropriately moving a small number of annotations which should actually be to reverse transcription or transcription, RNA-dependent to the transcription, DNA-dependent term.
To minimize reannotation work, we are leaning towards the MERGE option. We feel that the chance of creating bad annotations by transferring annotations from the "transcription" terms to the corresponding "transcription, DNA-dependent" terms is very small. If someone feels that there is a reason that these terms must be OBSOLETED instead of MERGED, please let us know.
Regardless of which option is chosen, we are not planning to create a replacement grouping term to group transcription, DNA-dependent and transcription, RNA-dependent. We feel that the existing term RNA biosynthetic process is sufficient, and unlikely to produce confusion in the way that having a grouping term named transcription has.
-Karen & David
Comment Period
Date mailed: 2/21/2011
Deadline for comments: 3/07/2011 - Unless objections are received by March 7, we will assume that you agree to this MERGE option.
Problems
- Transcription (GO:0006350) is defined incorrectly.
- Current definition: The cellular synthesis of either RNA on a template of DNA or DNA on a template of RNA.
- As written, the definition is specifically grouping "normal" (DNA-dependent) transcription from DNA templates with reverse transcription, which is actually a type of DNA synthesis which should NOT be grouped with transcription at all. It is also excluding production of RNA transcripts from RNA templates, which is a kind of transcription and which occurs in some viruses.
- Confusing use in annotations
- The term transcription (GO:0006350) is being used for annotations as if it were equivalent to transcription, DNA-dependent (GO:0006351), and similarly for the regulation of transcription terms compared with the regulation of transcription, DNA-dependent terms. This is occurring for thousands of annotations, about 20% of the annotations made to transcription or its child terms (numbers from AmiGO below). David and I have scanned a small subset of these annotations and strongly suspect that almost all of these annotations should have been made to the equivalent transcription, DNA-dependent terms, rather than just to transcription; many might be more appropriate going to the even more specific term for transcription from RNA polymerase II promoter.
- In addition to thousands of annotations to these 4 top level transcription terms, there are over 500 mappings (numbers of dbxref mappings below). These mappings are probably the main source of annotations as the vast majority of annotations to these high level grouping terms are by IEA (annotation counts for "transcription" below). So we will want to consider the fate of the mappings in this decision as well.
Fate of direct child terms, and other terms with relationships to these terms
terms with relationships to transcription (GO:0006350)
- already included in proposal
- - GO:0045449 regulation of transcription
- - GO:0045941 positive regulation of transcription
- - GO:0016481 negative regulation of transcription
- These terms should be handled in the same manner as transcription.
- input requested
- - GO:0000988 protein binding transcription factor activity
- - GO:0001071 nucleic acid binding transcription factor activity
- These are both new terms that have been added recently as part of the transcription overhaul. I put these in thinking only of DNA-dependent transcription. However, at the moment, nothing about the names or definitions of these terms distinguishes between DNA-dependent or RNA-dependent processes. If anyone knowledgeable about the RNA-dependent process thinks these functions would be needed for the RNA-dependent process, we can make these general terms and create new terms that are subtypes. If no one speaks up though, I might be inclined to just make these terms specific to DNA-dependent transcription since I know almost nothing about RNA-dependent transcription.
- removing part_of relationships for now, but think we NEED to make these terms specific to the DNA-dependent form of transcription and make new part_of's
- cross product relationships to be changed to use "transcription, DNA-dependent" done
- - GO:0034401 regulation of transcription by chromatin organization
- This term has transcription as part of cross product definition, but you have to have DNA to have chromatin, so this relationship seems like it would be more accurately made to transcription, DNA-dependent
- Note: Parentage may be wrong as it seems unlikely that all regulation of transcription by chromatin organization is in response to stress.
- new parentage needed
- - GO:0019083 viral transcription done
- Similarly to transcription, DNA-dependent, we think that RNA biosynthetic process would be a sufficient is_a parent for this term. It is not currently a parent, so it would need to be added when transcription is removed.
- no change needed
- - GO:0006351 transcription, DNA-dependent
- This already has an additional is_a parent of RNA biosynthetic process. We feel this is sufficient.
- to be dealt with separately
- - GO:0006410 transcription, RNA-dependent
- - GO:0032199 transcription involved in RNA-mediated transposition
- Note that cross product relationship from 32199 was changed from "transcription" to "reverse transcription"
terms with relationships to regulation of transcription (GO:0045449)
- is_a child terms of GO:0045449 ! regulation of transcription
- This is the term it is being merged into
- GO:0006355 - regulation of transcription, DNA-dependent
- giving "transcription, DNA-dependent direct is_a relationships to:
- GO:2000112 - regulation of cellular macromolecule biosynthetic process
- GO:0010468 - regulation of gene expression
- GO:0019219 - regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
- GO:0006355 - regulation of transcription, DNA-dependent
- This is the term it is being merged into
- These will be merged as well, so not an issue
- GO:0016481 - negative regulation of transcription
- GO:0045941 - positive regulation of transcription
- These can be moved down to be is_a children of "regulation of transcription, DNA-dependent" done
- GO:0031935 - regulation of chromatin silencing
- GO:0043620 - regulation of transcription in response to stress
- Def indicates organism is under stress. Is there any organismal txn that is not DNA-dependent?
- Should we modify the name to be more specific?
- GO:0044324 - regulation of transcription involved in anterior/posterior axis specification
- will move to be a child of "regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" (GO:0019219) for now have moved, will need to follow up on
- GO:0046782 - regulation of viral transcription (check with Jane)
- GO:0010630 - regulation of transcription, start site selection (defined with "or clause", obsolete and replaced with specific terms?)
- GO:0052312 - modulation of transcription in other organism involved in symbiotic interaction (check with PAMGO)
- GO:0075180 - regulation of transcription in response to host (check with PAMGO)
- These will be merged as well, so not an issue
- part_of relationship: to "regulation of transcription" (GO:0045449)
- This term will be merged also, so not an issue.
- GO:0030528 - transcription regulator activity
- have removed the part_of relationship without any replacement
- GO:0030528 - transcription regulator activity
- This term will be merged also, so not an issue.
- terms with intersection_of: GO:0045449 ! regulation of transcription
- These all seem like they could use "regulation of transcription, DNA-dependent" instead GO:0000114 - regulation of transcription involved in G1 phase of mitotic cell cycle
- GO:0000115 - regulation of transcription involved in S phase of mitotic cell cycle
- GO:0045896 - regulation of transcription during mitosis
- GO:0051037 - regulation of transcription during meiosis
- GO:0060849 - regulation of transcription involved in lymphatic endothelial cell fate commitment
- GO:0060850 - regulation of transcription involved in cell fate commitment
- GO:0060852 - regulation of transcription involved in venous endothelial cell fate commitment
- GO:0060899 - regulation of transcription involved in eye field cell fate commitment of camera-type eye
- GO:0090019 - regulation of transcription involved in anterior neural plate formation
- GO:0090020 - regulation of transcription involved in posterior neural plate formation
- done: David, you should look at these, some have RNAP II specific defs, but are using a more general term in cross product def. I have replaced "transcription" with "transcription, DNA-dependent" in the cross product relationship in all cases
- These all seem like they could use "regulation of transcription, DNA-dependent" instead GO:0000114 - regulation of transcription involved in G1 phase of mitotic cell cycle
of terms with relationships to positive regulation of transcription (GO:0045941)
- is_a children of positive regulation of transcription (GO:0045449)
- move to is_a pos reg of txn, DNA-dependent (GO:0045892) done
- GO:0045893 - positive regulation of transcription, DNA-dependent
- GO:0060469 - positive regulation of transcription involved in egg activation
- GO:0007072 - positive regulation of transcription on exit from mitosis
- move to is_a GO:0045935 - positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
- GO:0050434 - positive regulation of viral transcription check with Jane
- GO:0075181 - positive regulation of symbiont transcription in response to host include in SF item for PamGO
- move to is_a pos reg of txn, DNA-dependent (GO:0045892) done
- terms with part_of relationships to positive regulation of transcription (GO:0045941)
- done: for now, just removing without replacement
- have kept this term, so probably need to make specific to "transcription, DNA-dependent"
- GO:0003713 - transcription coactivator activity
- terms slated for merging into process terms
- GO:0016563 - transcription activator activity
- GO:0016986 - transcription initiation factor activity
- terms with intersection_of relationships : positive regulation of transcription (GO:0045941)
- These terms could use "regulation of transcription, DNA-dependent" instead done
- GO:0045897 - positive regulation of transcription during mitosis
- GO:0060469 - positive regulation of transcription involved in egg activation
- GO:0007072 - positive regulation of transcription on exit from mitosis
- These terms could use "regulation of transcription, DNA-dependent" instead done
of terms with relationships to negative regulation of transcription (GO:0016481)
- is_a child terms of negative regulation of transcription (GO:0016481)
- move to is_a neg reg of txn, DNA-dependent (GO:0045892) done
- GO:0010678 - negative regulation of cellular carbohydrate metabolic process by repression of transcription
- move to is_a neg reg of txn, DNA-dependent (GO:0045892) done
- move to is_a GO:0045934 - negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
- GO:0032897 - negative regulation of viral transcription check with Jane
- GO:0075182 - negative regulation of symbiont transcription in response to host check with PAMGO
- may need a new parent in regulation tree
- GO:0045892 - negative regulation of transcription, DNA-dependent
- move to is_a GO:0045934 - negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
- terms with part_of relationships to negative regulation of transcription (GO:0016481)
- removing part_of relationship for now, without replacement
- GO:0003714 - transcription corepressor activity
- GO:0016564 - transcription repressor activity
- GO:0016988 - transcription initiation factor antagonist activity
- terms with intersection_of relationships to negative regulation of transcription (GO:0016481)
- use "negative regulation of transcription, DNA-dependent" term instead done
- GO:0060277 - negative regulation of transcription involved in G1 phase of mitotic cell cycle
- Note: This term is a child of the neg reg of txn from RNAP II promoter term, but is not defined as RNAP II specific. It's Intersection Genus term (neg reg of transcription) is also broader than the position in the tree suggests
- GO:0060277 - negative regulation of transcription involved in G1 phase of mitotic cell cycle
- use "negative regulation of transcription, DNA-dependent" term instead done
Supporting Information
transcription & transcription, DNA-dependent term pairs
GO:0006350 transcription => GO:0006351 transcription, DNA-dependent GO:0045449 regulation of transcription => GO:0006355 regulation of transcription, DNA-dependent GO:0045941 positive regulation of transcription => GO:0045893 positive regulation of transcription, DNA-dependent GO:0016481 negative regulation of transcription => GO:0045892 negative regulation of transcription, DNA-dependent
Gene product Annotation counts from AmiGO (Jan 2011)
GO:0006350 : transcription [28093 gene products] - GO:0006351 : transcription, DNA-dependent [21637 gene products] - GO:0006410 : transcription, RNA-dependent [79 gene products] - GO:0019083 : viral transcription [265 gene products] GO:0045449 : regulation of transcription [25298 gene products] - GO:0006355 : regulation of transcription, DNA-dependent [19684 gene products] - GO:0046782 : regulation of viral transcription [80 gene products] GO:0045941 : positive regulation of transcription [3897 gene products] - GO:0045893 : positive regulation of transcription, DNA-dependent [3099 gene products] - GO:0050434 : positive regulation of viral transcription [58 gene products] GO:0016481 : negative regulation of transcription [4008 gene products] - GO:0075182 : negative regulation of symbiont transcription in response to host [1 gene product] - GO:0045892 : negative regulation of transcription, DNA-dependent [2852 gene products] - GO:0032897 : negative regulation of viral transcription [25 gene products]
Annotation counts for terms by Source and Evidence code (2-17-2011)
transcription
GO:0006350 transcription AspGD IEA 2 GO:0006350 transcription AspGD IMP 4 GO:0006350 transcription AspGD ISA 1 GO:0006350 transcription CGD IEA 6 GO:0006350 transcription dictyBase IC 1 GO:0006350 transcription dictyBase IEA 29 GO:0006350 transcription dictyBase ISS 1 GO:0006350 transcription EcoCyc IDA 11 GO:0006350 transcription EcoCyc IEA 470 GO:0006350 transcription EcoCyc IEP 17 GO:0006350 transcription EcoCyc IGI 3 GO:0006350 transcription EcoCyc IMP 11 GO:0006350 transcription EcoCyc ISS 53 GO:0006350 transcription EcoCyc RCA 1 GO:0006350 transcription Ensembl IEA 24 GO:0006350 transcription FB IDA 7 GO:0006350 transcription FB IEA 11 GO:0006350 transcription FB IEP 2 GO:0006350 transcription FB IMP 3 GO:0006350 transcription FB ISS 13 GO:0006350 transcription FB NAS 8 GO:0006350 transcription FB TAS 4 GO:0006350 transcription GeneDB_Pfalciparum ISS 1 GO:0006350 transcription GeneDB_Spombe IEA 3 GO:0006350 transcription GeneDB_Spombe ISS 5 GO:0006350 transcription GeneDB_Spombe NAS 1 GO:0006350 transcription GeneDB_Tbrucei IDA 1 GO:0006350 transcription GeneDB_Tbrucei ISS 13 GO:0006350 transcription GR_protein IC 1 GO:0006350 transcription GR_protein RCA 3 GO:0006350 transcription JCVI_CMR ISS 54 GO:0006350 transcription MGI IDA 4 GO:0006350 transcription MGI IEA 1594 GO:0006350 transcription MGI IGI 1 GO:0006350 transcription MGI IMP 3 GO:0006350 transcription MGI IPI 1 GO:0006350 transcription MGI ISA 1 GO:0006350 transcription MGI ISO 5 GO:0006350 transcription MGI ISS 1 GO:0006350 transcription MGI NAS 2 GO:0006350 transcription MGI TAS 6 GO:0006350 transcription NCBI ISS 2 GO:0006350 transcription PDB IEA 2653 GO:0006350 transcription PseudoCAP RCA 6 GO:0006350 transcription RefSeq IEA 22 GO:0006350 transcription RGD IEA 43 GO:0006350 transcription RGD ISO 13 GO:0006350 transcription RGD ISS 1 GO:0006350 transcription SGD IDA 6 GO:0006350 transcription SGD IEA 574 GO:0006350 transcription SGD IGI 6 GO:0006350 transcription SGD IMP 8 GO:0006350 transcription SGD IPI 8 GO:0006350 transcription SGD ISA 1 GO:0006350 transcription SGD ISS 3 GO:0006350 transcription SGD RCA 2 GO:0006350 transcription SGD TAS 4 GO:0006350 transcription SGN IEP 1 GO:0006350 transcription TAIR IEA 57 GO:0006350 transcription TAIR ISS 42 GO:0006350 transcription TIGR_CMR ISS 71 GO:0006350 transcription UniProtKB IDA 11 GO:0006350 transcription UniProtKB IEA 467041 GO:0006350 transcription UniProtKB ISS 7 GO:0006350 transcription UniProtKB NAS 7 GO:0006350 transcription UniProtKB TAS 204 GO:0006350 transcription WB IDA 1 GO:0006350 transcription WB IEA 30 GO:0006350 transcription WB IMP 1 GO:0006350 transcription ZFIN IEA 592
regulation of transcription
GO:0045449 regulation of transcription ASAP IMP 1 GO:0045449 regulation of transcription AspGD IEA 5 GO:0045449 regulation of transcription AspGD IMP 3 GO:0045449 regulation of transcription AspGD ISS 2 GO:0045449 regulation of transcription CGD IEA 9 GO:0045449 regulation of transcription CGD IMP 4 GO:0045449 regulation of transcription CGD ISS 1 GO:0045449 regulation of transcription CGD TAS 1 GO:0045449 regulation of transcription dictyBase IEA 25 GO:0045449 regulation of transcription dictyBase IMP 2 GO:0045449 regulation of transcription dictyBase ISS 7 GO:0045449 regulation of transcription EcoCyc IEA 174 GO:0045449 regulation of transcription Ensembl IEA 91 GO:0045449 regulation of transcription FB IDA 13 GO:0045449 regulation of transcription FB IEA 56 GO:0045449 regulation of transcription FB IGI 1 GO:0045449 regulation of transcription FB IMP 20 GO:0045449 regulation of transcription FB ISS 81 GO:0045449 regulation of transcription FB NAS 31 GO:0045449 regulation of transcription FB TAS 13 GO:0045449 regulation of transcription GeneDB_Spombe IDA 3 GO:0045449 regulation of transcription GeneDB_Spombe IEA 4 GO:0045449 regulation of transcription GeneDB_Spombe IMP 1 GO:0045449 regulation of transcription GeneDB_Spombe ISS 33 GO:0045449 regulation of transcription GeneDB_Spombe NAS 3 GO:0045449 regulation of transcription GeneDB_Spombe RCA 1 GO:0045449 regulation of transcription GeneDB_Spombe TAS 6 GO:0045449 regulation of transcription GR_protein IC 304 GO:0045449 regulation of transcription GR_protein IDA 1 GO:0045449 regulation of transcription GR_protein ISS 1 GO:0045449 regulation of transcription GR_protein RCA 18 GO:0045449 regulation of transcription JCVI_CMR IDA 2 GO:0045449 regulation of transcription JCVI_CMR IMP 2 GO:0045449 regulation of transcription JCVI_CMR ISS 57 GO:0045449 regulation of transcription MGI IDA 48 GO:0045449 regulation of transcription MGI IEA 1925 GO:0045449 regulation of transcription MGI IGI 6 GO:0045449 regulation of transcription MGI IMP 17 GO:0045449 regulation of transcription MGI IPI 1 GO:0045449 regulation of transcription MGI ISA 4 GO:0045449 regulation of transcription MGI ISO 39 GO:0045449 regulation of transcription MGI ISS 4 GO:0045449 regulation of transcription MGI NAS 3 GO:0045449 regulation of transcription MGI TAS 10 GO:0045449 regulation of transcription PDB IDA 12 GO:0045449 regulation of transcription PDB IEA 2737 GO:0045449 regulation of transcription PDB IGI 12 GO:0045449 regulation of transcription PDB IMP 21 GO:0045449 regulation of transcription PseudoCAP IDA 4 GO:0045449 regulation of transcription PseudoCAP ISS 2 GO:0045449 regulation of transcription PseudoCAP RCA 13 GO:0045449 regulation of transcription RefSeq IEA 61 GO:0045449 regulation of transcription RGD IDA 5 GO:0045449 regulation of transcription RGD IEA 332 GO:0045449 regulation of transcription RGD IMP 1 GO:0045449 regulation of transcription RGD ISO 90 GO:0045449 regulation of transcription RGD ISS 8 GO:0045449 regulation of transcription RGD NAS 2 GO:0045449 regulation of transcription RGD TAS 4 GO:0045449 regulation of transcription SGD IC 1 GO:0045449 regulation of transcription SGD IDA 2 GO:0045449 regulation of transcription SGD IEA 524 GO:0045449 regulation of transcription SGD IEP 1 GO:0045449 regulation of transcription SGD IGI 1 GO:0045449 regulation of transcription SGD IMP 15 GO:0045449 regulation of transcription SGD IPI 1 GO:0045449 regulation of transcription SGD TAS 2 GO:0045449 regulation of transcription TAIR IDA 6 GO:0045449 regulation of transcription TAIR IEA 224 GO:0045449 regulation of transcription TAIR IEP 3 GO:0045449 regulation of transcription TAIR IGI 3 GO:0045449 regulation of transcription TAIR IMP 9 GO:0045449 regulation of transcription TAIR ISS 2 GO:0045449 regulation of transcription TAIR TAS 529 GO:0045449 regulation of transcription TIGR_CMR ISS 41 GO:0045449 regulation of transcription UniProt IMP 2 GO:0045449 regulation of transcription UniProtKB IDA 52 GO:0045449 regulation of transcription UniProtKB IEA 471085 GO:0045449 regulation of transcription UniProtKB IGI 2 GO:0045449 regulation of transcription UniProtKB IMP 21 GO:0045449 regulation of transcription UniProtKB ISS 108 GO:0045449 regulation of transcription UniProtKB NAS 17 GO:0045449 regulation of transcription UniProtKB TAS 5 GO:0045449 regulation of transcription WB IC 1 GO:0045449 regulation of transcription WB IDA 2 GO:0045449 regulation of transcription WB IEA 193 GO:0045449 regulation of transcription WB IEP 2 GO:0045449 regulation of transcription WB ISS 5 GO:0045449 regulation of transcription WB TAS 7 GO:0045449 regulation of transcription ZFIN IDA 9 GO:0045449 regulation of transcription ZFIN IEA 1193 GO:0045449 regulation of transcription ZFIN IGI 2 GO:0045449 regulation of transcription ZFIN IMP 5 GO:0045449 regulation of transcription ZFIN ISS 2
positive regulation of transcription
GO:0045941 positive regulation of transcription ASAP IMP 2 GO:0045941 positive regulation of transcription ASAP ISA 2 GO:0045941 positive regulation of transcription AspGD IDA 1 GO:0045941 positive regulation of transcription AspGD IEA 1 GO:0045941 positive regulation of transcription AspGD IMP 2 GO:0045941 positive regulation of transcription CGD IDA 1 GO:0045941 positive regulation of transcription CGD IEA 1 GO:0045941 positive regulation of transcription CGD IMP 1 GO:0045941 positive regulation of transcription CGD ISS 1 GO:0045941 positive regulation of transcription dictyBase IEA 2 GO:0045941 positive regulation of transcription dictyBase IMP 2 GO:0045941 positive regulation of transcription dictyBase ISS 1 GO:0045941 positive regulation of transcription EcoCyc IEA 6 GO:0045941 positive regulation of transcription EcoCyc IMP 1 GO:0045941 positive regulation of transcription FB IDA 4 GO:0045941 positive regulation of transcription FB IEA 3 GO:0045941 positive regulation of transcription FB IGI 1 GO:0045941 positive regulation of transcription FB IMP 15 GO:0045941 positive regulation of transcription FB ISS 4 GO:0045941 positive regulation of transcription FB NAS 1 GO:0045941 positive regulation of transcription FB TAS 7 GO:0045941 positive regulation of transcription GeneDB_Spombe IDA 2 GO:0045941 positive regulation of transcription GeneDB_Spombe IEA 4 GO:0045941 positive regulation of transcription GeneDB_Spombe IGI 1 GO:0045941 positive regulation of transcription GeneDB_Spombe ISS 4 GO:0045941 positive regulation of transcription JCVI_CMR ISS 6 GO:0045941 positive regulation of transcription MGI IC 1 GO:0045941 positive regulation of transcription MGI IDA 128 GO:0045941 positive regulation of transcription MGI IEA 7 GO:0045941 positive regulation of transcription MGI IGI 6 GO:0045941 positive regulation of transcription MGI IMP 26 GO:0045941 positive regulation of transcription MGI IPI 3 GO:0045941 positive regulation of transcription MGI ISA 6 GO:0045941 positive regulation of transcription MGI ISO 137 GO:0045941 positive regulation of transcription MGI ISS 25 GO:0045941 positive regulation of transcription MGI TAS 14 GO:0045941 positive regulation of transcription PDB IDA 17 GO:0045941 positive regulation of transcription PDB IEA 60 GO:0045941 positive regulation of transcription PDB IGI 2 GO:0045941 positive regulation of transcription RefSeq IEA 1 GO:0045941 positive regulation of transcription RGD IDA 20 GO:0045941 positive regulation of transcription RGD IEA 21 GO:0045941 positive regulation of transcription RGD IEP 2 GO:0045941 positive regulation of transcription RGD IMP 14 GO:0045941 positive regulation of transcription RGD ISO 209 GO:0045941 positive regulation of transcription RGD ISS 17 GO:0045941 positive regulation of transcription RGD TAS 1 GO:0045941 positive regulation of transcription SGD IDA 3 GO:0045941 positive regulation of transcription SGD IEA 3 GO:0045941 positive regulation of transcription SGD IGI 1 GO:0045941 positive regulation of transcription SGD IMP 4 GO:0045941 positive regulation of transcription SGD IPI 2 GO:0045941 positive regulation of transcription SGD RCA 37 GO:0045941 positive regulation of transcription TAIR IDA 19 GO:0045941 positive regulation of transcription TAIR IEA 6 GO:0045941 positive regulation of transcription TAIR IEP 6 GO:0045941 positive regulation of transcription TAIR IGI 3 GO:0045941 positive regulation of transcription TAIR IMP 4 GO:0045941 positive regulation of transcription TAIR IPI 1 GO:0045941 positive regulation of transcription TAIR ISS 1 GO:0045941 positive regulation of transcription TAIR TAS 6 GO:0045941 positive regulation of transcription TIGR_CMR ISS 1 GO:0045941 positive regulation of transcription UniProt IDA 1 GO:0045941 positive regulation of transcription UniProt IMP 3 GO:0045941 positive regulation of transcription UniProtKB IDA 138 GO:0045941 positive regulation of transcription UniProtKB IEA 5256 GO:0045941 positive regulation of transcription UniProtKB IGI 3 GO:0045941 positive regulation of transcription UniProtKB IMP 27 GO:0045941 positive regulation of transcription UniProtKB ISS 202 GO:0045941 positive regulation of transcription UniProtKB NAS 7 GO:0045941 positive regulation of transcription UniProtKB TAS 10 GO:0045941 positive regulation of transcription WB IDA 1 GO:0045941 positive regulation of transcription WB IEA 1 GO:0045941 positive regulation of transcription WB IMP 1 GO:0045941 positive regulation of transcription ZFIN IDA 4 GO:0045941 positive regulation of transcription ZFIN IEA 17 GO:0045941 positive regulation of transcription ZFIN IGI 4 GO:0045941 positive regulation of transcription ZFIN IMP 8 GO:0045941 positive regulation of transcription ZFIN IPI 5 GO:0045941 positive regulation of transcription ZFIN NAS 1
negative regulation of transcription
GO:0016481 negative regulation of transcription ASAP IDA 1 GO:0016481 negative regulation of transcription ASAP IMP 1 GO:0016481 negative regulation of transcription ASAP ISA 1 GO:0016481 negative regulation of transcription AspGD IEA 1 GO:0016481 negative regulation of transcription AspGD IMP 3 GO:0016481 negative regulation of transcription CGD IDA 1 GO:0016481 negative regulation of transcription CGD IGI 1 GO:0016481 negative regulation of transcription CGD IMP 9 GO:0016481 negative regulation of transcription CGD ISS 1 GO:0016481 negative regulation of transcription dictyBase IEA 1 GO:0016481 negative regulation of transcription dictyBase ISS 1 GO:0016481 negative regulation of transcription EcoCyc IDA 2 GO:0016481 negative regulation of transcription EcoCyc IEA 2 GO:0016481 negative regulation of transcription EcoCyc IMP 1 GO:0016481 negative regulation of transcription Ensembl IEA 3 GO:0016481 negative regulation of transcription FB IDA 18 GO:0016481 negative regulation of transcription FB IEA 2 GO:0016481 negative regulation of transcription FB IEP 2 GO:0016481 negative regulation of transcription FB IGI 4 GO:0016481 negative regulation of transcription FB IMP 10 GO:0016481 negative regulation of transcription FB ISS 3 GO:0016481 negative regulation of transcription FB NAS 14 GO:0016481 negative regulation of transcription FB TAS 8 GO:0016481 negative regulation of transcription GeneDB_Spombe IMP 1 GO:0016481 negative regulation of transcription GeneDB_Spombe ISS 5 GO:0016481 negative regulation of transcription GeneDB_Tbrucei ISS 3 GO:0016481 negative regulation of transcription JCVI_CMR ISS 8 GO:0016481 negative regulation of transcription MGI IC 2 GO:0016481 negative regulation of transcription MGI IDA 75 GO:0016481 negative regulation of transcription MGI IEA 6 GO:0016481 negative regulation of transcription MGI IGI 4 GO:0016481 negative regulation of transcription MGI IMP 16 GO:0016481 negative regulation of transcription MGI IPI 1 GO:0016481 negative regulation of transcription MGI ISA 3 GO:0016481 negative regulation of transcription MGI ISO 119 GO:0016481 negative regulation of transcription MGI ISS 42 GO:0016481 negative regulation of transcription MGI NAS 2 GO:0016481 negative regulation of transcription MGI RCA 1 GO:0016481 negative regulation of transcription MGI TAS 6 GO:0016481 negative regulation of transcription PDB IDA 37 GO:0016481 negative regulation of transcription PDB IEA 478 GO:0016481 negative regulation of transcription RefSeq IEA 2 GO:0016481 negative regulation of transcription RGD IDA 14 GO:0016481 negative regulation of transcription RGD IEA 18 GO:0016481 negative regulation of transcription RGD IEP 1 GO:0016481 negative regulation of transcription RGD IMP 13 GO:0016481 negative regulation of transcription RGD ISO 174 GO:0016481 negative regulation of transcription RGD ISS 20 GO:0016481 negative regulation of transcription RGD NAS 1 GO:0016481 negative regulation of transcription RGD TAS 2 GO:0016481 negative regulation of transcription SGD IDA 4 GO:0016481 negative regulation of transcription SGD IEA 2 GO:0016481 negative regulation of transcription SGD IMP 6 GO:0016481 negative regulation of transcription SGD IPI 2 GO:0016481 negative regulation of transcription SGD RCA 31 GO:0016481 negative regulation of transcription TAIR IDA 8 GO:0016481 negative regulation of transcription TAIR IEA 4 GO:0016481 negative regulation of transcription TAIR IEP 8 GO:0016481 negative regulation of transcription TAIR IGI 1 GO:0016481 negative regulation of transcription TAIR IMP 14 GO:0016481 negative regulation of transcription TAIR IPI 2 GO:0016481 negative regulation of transcription TAIR ISS 2 GO:0016481 negative regulation of transcription TAIR TAS 1 GO:0016481 negative regulation of transcription TIGR_CMR ISS 16 GO:0016481 negative regulation of transcription UniProt IDA 1 GO:0016481 negative regulation of transcription UniProt IGI 2 GO:0016481 negative regulation of transcription UniProtKB IC 1 GO:0016481 negative regulation of transcription UniProtKB IDA 116 GO:0016481 negative regulation of transcription UniProtKB IEA 42674 GO:0016481 negative regulation of transcription UniProtKB IMP 27 GO:0016481 negative regulation of transcription UniProtKB ISS 123 GO:0016481 negative regulation of transcription UniProtKB NAS 17 GO:0016481 negative regulation of transcription UniProtKB TAS 1 GO:0016481 negative regulation of transcription WB IDA 2 GO:0016481 negative regulation of transcription WB IEA 2 GO:0016481 negative regulation of transcription WB IMP 2 GO:0016481 negative regulation of transcription WB ISS 1 GO:0016481 negative regulation of transcription WB TAS 3 GO:0016481 negative regulation of transcription ZFIN IDA 5 GO:0016481 negative regulation of transcription ZFIN IEA 8 GO:0016481 negative regulation of transcription ZFIN IGI 2 GO:0016481 negative regulation of transcription ZFIN IMP 2
Subsets that terms are included in (2-17-2011)
GO:0006350 transcription Candida GO slim GO:0006350 transcription Fission yeast GO slim GO:0006350 transcription Generic GO slim GO:0006350 transcription PIR GO slim GO:0006350 transcription Plant GO slim GO:0006350 transcription Prokaryotic GO subset GO:0006350 transcription Yeast GO slim GO:0016481 negative regulation of transcription Prokaryotic GO subset GO:0045449 regulation of transcription Prokaryotic GO subset GO:0045941 positive regulation of transcription Prokaryotic GO subset
Non-definition dbxrefs for terms (2-17-2011)
transcription
GO:0006350 transcription COG:K GO:0006350 transcription InterPro:IPR000722 GO:0006350 transcription InterPro:IPR000783 GO:0006350 transcription InterPro:IPR001009 GO:0006350 transcription InterPro:IPR001016 GO:0006350 transcription InterPro:IPR001205 GO:0006350 transcription InterPro:IPR001407 GO:0006350 transcription InterPro:IPR001514 GO:0006350 transcription InterPro:IPR001529 GO:0006350 transcription InterPro:IPR001591 GO:0006350 transcription InterPro:IPR001788 GO:0006350 transcription InterPro:IPR001795 GO:0006350 transcription InterPro:IPR002092 GO:0006350 transcription InterPro:IPR002166 GO:0006350 transcription InterPro:IPR002693 GO:0006350 transcription InterPro:IPR003176 GO:0006350 transcription InterPro:IPR003617 GO:0006350 transcription InterPro:IPR003618 GO:0006350 transcription InterPro:IPR004519 GO:0006350 transcription InterPro:IPR005570 GO:0006350 transcription InterPro:IPR005571 GO:0006350 transcription InterPro:IPR005574 GO:0006350 transcription InterPro:IPR005576 GO:0006350 transcription InterPro:IPR006288 GO:0006350 transcription InterPro:IPR006591 GO:0006350 transcription InterPro:IPR006592 GO:0006350 transcription InterPro:IPR006711 GO:0006350 transcription InterPro:IPR006712 GO:0006350 transcription InterPro:IPR006886 GO:0006350 transcription InterPro:IPR007012 GO:0006350 transcription InterPro:IPR007015 GO:0006350 transcription InterPro:IPR007025 GO:0006350 transcription InterPro:IPR007066 GO:0006350 transcription InterPro:IPR007073 GO:0006350 transcription InterPro:IPR007075 GO:0006350 transcription InterPro:IPR007080 GO:0006350 transcription InterPro:IPR007081 GO:0006350 transcription InterPro:IPR007083 GO:0006350 transcription InterPro:IPR007120 GO:0006350 transcription InterPro:IPR007121 GO:0006350 transcription InterPro:IPR007219 GO:0006350 transcription InterPro:IPR007322 GO:0006350 transcription InterPro:IPR007610 GO:0006350 transcription InterPro:IPR007641 GO:0006350 transcription InterPro:IPR007642 GO:0006350 transcription InterPro:IPR007644 GO:0006350 transcription InterPro:IPR007645 GO:0006350 transcription InterPro:IPR007646 GO:0006350 transcription InterPro:IPR007647 GO:0006350 transcription InterPro:IPR007759 GO:0006350 transcription InterPro:IPR007832 GO:0006350 transcription InterPro:IPR008193 GO:0006350 transcription InterPro:IPR008448 GO:0006350 transcription InterPro:IPR008723 GO:0006350 transcription InterPro:IPR008806 GO:0006350 transcription InterPro:IPR009025 GO:0006350 transcription InterPro:IPR009162 GO:0006350 transcription InterPro:IPR009469 GO:0006350 transcription InterPro:IPR009668 GO:0006350 transcription InterPro:IPR009674 GO:0006350 transcription InterPro:IPR010243 GO:0006350 transcription InterPro:IPR010533 GO:0006350 transcription InterPro:IPR011260 GO:0006350 transcription InterPro:IPR011261 GO:0006350 transcription InterPro:IPR011262 GO:0006350 transcription InterPro:IPR011263 GO:0006350 transcription InterPro:IPR012164 GO:0006350 transcription InterPro:IPR012754 GO:0006350 transcription InterPro:IPR012755 GO:0006350 transcription InterPro:IPR012756 GO:0006350 transcription InterPro:IPR012757 GO:0006350 transcription InterPro:IPR012758 GO:0006350 transcription InterPro:IPR013676 GO:0006350 transcription InterPro:IPR015699 GO:0006350 transcription InterPro:IPR015700 GO:0006350 transcription InterPro:IPR015712 GO:0006350 transcription InterPro:IPR016075 GO:0006350 transcription InterPro:IPR016263 GO:0006350 transcription InterPro:IPR016371 GO:0006350 transcription InterPro:IPR017890 GO:0006350 transcription InterPro:IPR017923 GO:0006350 transcription InterPro:IPR019969 GO:0006350 transcription InterPro:IPR020357 GO:0006350 transcription JCVI_TIGRFAMS:TIGR00448 GO:0006350 transcription JCVI_TIGRFAMS:TIGR00621 GO:0006350 transcription JCVI_TIGRFAMS:TIGR00690 GO:0006350 transcription JCVI_TIGRFAMS:TIGR01384 GO:0006350 transcription JCVI_TIGRFAMS:TIGR01385 GO:0006350 transcription JCVI_TIGRFAMS:TIGR02013 GO:0006350 transcription JCVI_TIGRFAMS:TIGR02027 GO:0006350 transcription JCVI_TIGRFAMS:TIGR02386 GO:0006350 transcription JCVI_TIGRFAMS:TIGR03298 GO:0006350 transcription MIPS_funcat:11 GO:0006350 transcription MIPS_funcat:11.02.03.01 GO:0006350 transcription MultiFun:2.2.2 GO:0006350 transcription Pfam:PF00562 GO:0006350 transcription Pfam:PF00602 GO:0006350 transcription Pfam:PF00603 GO:0006350 transcription Pfam:PF00604 GO:0006350 transcription Pfam:PF00623 GO:0006350 transcription Pfam:PF00680 GO:0006350 transcription Pfam:PF00940 GO:0006350 transcription Pfam:PF00946 GO:0006350 transcription Pfam:PF00978 GO:0006350 transcription Pfam:PF00998 GO:0006350 transcription Pfam:PF01000 GO:0006350 transcription Pfam:PF01191 GO:0006350 transcription Pfam:PF01193 GO:0006350 transcription Pfam:PF01806 GO:0006350 transcription Pfam:PF02123 GO:0006350 transcription Pfam:PF02150 GO:0006350 transcription Pfam:PF02236 GO:0006350 transcription Pfam:PF03118 GO:0006350 transcription Pfam:PF03604 GO:0006350 transcription Pfam:PF03870 GO:0006350 transcription Pfam:PF03871 GO:0006350 transcription Pfam:PF03874 GO:0006350 transcription Pfam:PF03876 GO:0006350 transcription Pfam:PF04082 GO:0006350 transcription Pfam:PF04196 GO:0006350 transcription Pfam:PF04522 GO:0006350 transcription Pfam:PF04560 GO:0006350 transcription Pfam:PF04561 GO:0006350 transcription Pfam:PF04563 GO:0006350 transcription Pfam:PF04565 GO:0006350 transcription Pfam:PF04566 GO:0006350 transcription Pfam:PF04567 GO:0006350 transcription Pfam:PF04617 GO:0006350 transcription Pfam:PF04618 GO:0006350 transcription Pfam:PF04801 GO:0006350 transcription Pfam:PF04928 GO:0006350 transcription Pfam:PF04931 GO:0006350 transcription Pfam:PF04941 GO:0006350 transcription Pfam:PF04983 GO:0006350 transcription Pfam:PF04990 GO:0006350 transcription Pfam:PF04992 GO:0006350 transcription Pfam:PF04997 GO:0006350 transcription Pfam:PF04998 GO:0006350 transcription Pfam:PF05000 GO:0006350 transcription Pfam:PF05066 GO:0006350 transcription Pfam:PF05158 GO:0006350 transcription Pfam:PF05645 GO:0006350 transcription Pfam:PF05788 GO:0006350 transcription Pfam:PF05864 GO:0006350 transcription Pfam:PF06478 GO:0006350 transcription Pfam:PF06529 GO:0006350 transcription Pfam:PF06870 GO:0006350 transcription Pfam:PF06883 GO:0006350 transcription Pfam:PF07180 GO:0006350 transcription Pfam:PF07500 GO:0006350 transcription Pfam:PF08469 GO:0006350 transcription Pfam:PF08711 GO:0006350 transcription PIRSF:PIRSF000745 GO:0006350 transcription PIRSF:PIRSF000770 GO:0006350 transcription PIRSF:PIRSF000779 GO:0006350 transcription PIRSF:PIRSF000821 GO:0006350 transcription PIRSF:PIRSF000827 GO:0006350 transcription PIRSF:PIRSF002939 GO:0006350 transcription PIRSF:PIRSF005586 GO:0006350 transcription PIRSF:PIRSF028763 GO:0006350 transcription PRINTS:PR00914 GO:0006350 transcription ProDom:PD001179 GO:0006350 transcription ProDom:PD001667 GO:0006350 transcription ProDom:PD005155 GO:0006350 transcription ProDom:PD019250 GO:0006350 transcription ProDom:PD081346 GO:0006350 transcription PROSITE:MF_00357 GO:0006350 transcription PROSITE:MF_00411 GO:0006350 transcription PROSITE:MF_01321 GO:0006350 transcription PROSITE:MF_01322 GO:0006350 transcription PROSITE:MF_01324 GO:0006350 transcription PROSITE:PS00446 GO:0006350 transcription PROSITE:PS00489 GO:0006350 transcription PROSITE:PS00900 GO:0006350 transcription PROSITE:PS01154 GO:0006350 transcription PROSITE:PS01166 GO:0006350 transcription PROSITE:PS51319 GO:0006350 transcription PROSITE:PS51321 GO:0006350 transcription Reactome:1006454 GO:0006350 transcription Reactome:1006472 GO:0006350 transcription Reactome:1024797 GO:0006350 transcription Reactome:1024798 GO:0006350 transcription Reactome:1051758 GO:0006350 transcription Reactome:1051777 GO:0006350 transcription Reactome:1076727 GO:0006350 transcription Reactome:1076728 GO:0006350 transcription Reactome:1097242 GO:0006350 transcription Reactome:1097243 GO:0006350 transcription Reactome:1116518 GO:0006350 transcription Reactome:1116536 GO:0006350 transcription Reactome:1140334 GO:0006350 transcription Reactome:1140353 GO:0006350 transcription Reactome:1170595 GO:0006350 transcription Reactome:1170596 GO:0006350 transcription Reactome:1192400 GO:0006350 transcription Reactome:1192418 GO:0006350 transcription Reactome:1206594 GO:0006350 transcription Reactome:1206613 GO:0006350 transcription Reactome:1221238 GO:0006350 transcription Reactome:1221239 GO:0006350 transcription Reactome:1239222 GO:0006350 transcription Reactome:1239223 GO:0006350 transcription Reactome:1246798 GO:0006350 transcription Reactome:1246799 GO:0006350 transcription Reactome:1252555 GO:0006350 transcription Reactome:1252556 GO:0006350 transcription Reactome:1258342 GO:0006350 transcription Reactome:1258343 GO:0006350 transcription Reactome:1262041 GO:0006350 transcription Reactome:1262042 GO:0006350 transcription Reactome:504046 GO:0006350 transcription Reactome:74159 GO:0006350 transcription Reactome:979861 GO:0006350 transcription Reactome:979877 GO:0006350 transcription SMART:SM00509 GO:0006350 transcription SMART:SM00510 GO:0006350 transcription SMART:SM00658 GO:0006350 transcription SMART:SM00659 GO:0006350 transcription SMART:SM00661 GO:0006350 transcription SMART:SM00662 GO:0006350 transcription SMART:SM00663 GO:0006350 transcription SMART:SM00906 GO:0006350 transcription SP_KW:KW-0804 GO:0006350 transcription TIGR_role:20050 GO:0006350 transcription Wikipedia:Transcription_(genetics)
negative regulation of transcription
GO:0016481 negative regulation of transcription HAMAP:MF_01140 GO:0016481 negative regulation of transcription HAMAP:MF_01814 GO:0016481 negative regulation of transcription InterPro:IPR003012 GO:0016481 negative regulation of transcription InterPro:IPR003796 GO:0016481 negative regulation of transcription InterPro:IPR004111 GO:0016481 negative regulation of transcription InterPro:IPR005650 GO:0016481 negative regulation of transcription InterPro:IPR006942 GO:0016481 negative regulation of transcription InterPro:IPR006986 GO:0016481 negative regulation of transcription InterPro:IPR006988 GO:0016481 negative regulation of transcription InterPro:IPR006989 GO:0016481 negative regulation of transcription InterPro:IPR007412 GO:0016481 negative regulation of transcription InterPro:IPR008468 GO:0016481 negative regulation of transcription InterPro:IPR009718 GO:0016481 negative regulation of transcription InterPro:IPR010078 GO:0016481 negative regulation of transcription InterPro:IPR010089 GO:0016481 negative regulation of transcription InterPro:IPR010405 GO:0016481 negative regulation of transcription InterPro:IPR010575 GO:0016481 negative regulation of transcription InterPro:IPR010712 GO:0016481 negative regulation of transcription InterPro:IPR010744 GO:0016481 negative regulation of transcription InterPro:IPR011350 GO:0016481 negative regulation of transcription InterPro:IPR012712 GO:0016481 negative regulation of transcription InterPro:IPR012771 GO:0016481 negative regulation of transcription InterPro:IPR012925 GO:0016481 negative regulation of transcription InterPro:IPR013571 GO:0016481 negative regulation of transcription InterPro:IPR013573 GO:0016481 negative regulation of transcription InterPro:IPR015309 GO:0016481 negative regulation of transcription InterPro:IPR015893 GO:0016481 negative regulation of transcription InterPro:IPR016429 GO:0016481 negative regulation of transcription InterPro:IPR017275 GO:0016481 negative regulation of transcription JCVI_TIGRFAMS:TIGR02451 GO:0016481 negative regulation of transcription Pfam:PF02909 GO:0016481 negative regulation of transcription Pfam:PF03965 GO:0016481 negative regulation of transcription Pfam:PF04316 GO:0016481 negative regulation of transcription Pfam:PF04858 GO:0016481 negative regulation of transcription Pfam:PF04902 GO:0016481 negative regulation of transcription Pfam:PF04904 GO:0016481 negative regulation of transcription Pfam:PF04905 GO:0016481 negative regulation of transcription Pfam:PF05499 GO:0016481 negative regulation of transcription Pfam:PF06209 GO:0016481 negative regulation of transcription Pfam:PF06613 GO:0016481 negative regulation of transcription Pfam:PF06953 GO:0016481 negative regulation of transcription Pfam:PF06971 GO:0016481 negative regulation of transcription Pfam:PF07022 GO:0016481 negative regulation of transcription Pfam:PF07739 GO:0016481 negative regulation of transcription Pfam:PF08360 GO:0016481 negative regulation of transcription Pfam:PF08362 GO:0016481 negative regulation of transcription Pfam:PF09228 GO:0016481 negative regulation of transcription PIRSF:PIRSF000197 GO:0016481 negative regulation of transcription PIRSF:PIRSF004776 GO:0016481 negative regulation of transcription PIRSF:PIRSF017930 GO:0016481 negative regulation of transcription PIRSF:PIRSF037733 GO:0016481 negative regulation of transcription PRINTS:PR00400 GO:0016481 negative regulation of transcription ProDom:PD342192 GO:0016481 negative regulation of transcription ProDom:PD492828 GO:0016481 negative regulation of transcription PROSITE:MF_00440 GO:0016481 negative regulation of transcription PROSITE:MF_01017 GO:0016481 negative regulation of transcription PROSITE:MF_01814
regulation of transcription
GO:0045449 regulation of transcription HAMAP:MF_00637 GO:0045449 regulation of transcription HAMAP:MF_00638 GO:0045449 regulation of transcription HAMAP:MF_00696 GO:0045449 regulation of transcription HAMAP:MF_01181 GO:0045449 regulation of transcription HAMAP:MF_01449 GO:0045449 regulation of transcription HAMAP:MF_01607 GO:0045449 regulation of transcription InterPro:IPR001092 GO:0045449 regulation of transcription InterPro:IPR001222 GO:0045449 regulation of transcription InterPro:IPR001523 GO:0045449 regulation of transcription InterPro:IPR002717 GO:0045449 regulation of transcription InterPro:IPR002910 GO:0045449 regulation of transcription InterPro:IPR003000 GO:0045449 regulation of transcription InterPro:IPR003311 GO:0045449 regulation of transcription InterPro:IPR003441 GO:0045449 regulation of transcription InterPro:IPR003657 GO:0045449 regulation of transcription InterPro:IPR003851 GO:0045449 regulation of transcription InterPro:IPR004092 GO:0045449 regulation of transcription InterPro:IPR005559 GO:0045449 regulation of transcription InterPro:IPR006197 GO:0045449 regulation of transcription InterPro:IPR006377 GO:0045449 regulation of transcription InterPro:IPR006417 GO:0045449 regulation of transcription InterPro:IPR006699 GO:0045449 regulation of transcription InterPro:IPR006779 GO:0045449 regulation of transcription InterPro:IPR006793 GO:0045449 regulation of transcription InterPro:IPR006794 GO:0045449 regulation of transcription InterPro:IPR006820 GO:0045449 regulation of transcription InterPro:IPR006923 GO:0045449 regulation of transcription InterPro:IPR007127 GO:0045449 regulation of transcription InterPro:IPR007198 GO:0045449 regulation of transcription InterPro:IPR007207 GO:0045449 regulation of transcription InterPro:IPR007282 GO:0045449 regulation of transcription InterPro:IPR007448 GO:0045449 regulation of transcription InterPro:IPR007576 GO:0045449 regulation of transcription InterPro:IPR007582 GO:0045449 regulation of transcription InterPro:IPR007654 GO:0045449 regulation of transcription InterPro:IPR007668 GO:0045449 regulation of transcription InterPro:IPR007684 GO:0045449 regulation of transcription InterPro:IPR007689 GO:0045449 regulation of transcription InterPro:IPR007738 GO:0045449 regulation of transcription InterPro:IPR007790 GO:0045449 regulation of transcription InterPro:IPR007933 GO:0045449 regulation of transcription InterPro:IPR008095 GO:0045449 regulation of transcription InterPro:IPR008246 GO:0045449 regulation of transcription InterPro:IPR008247 GO:0045449 regulation of transcription InterPro:IPR008329 GO:0045449 regulation of transcription InterPro:IPR008415 GO:0045449 regulation of transcription InterPro:IPR008422 GO:0045449 regulation of transcription InterPro:IPR008648 GO:0045449 regulation of transcription InterPro:IPR008807 GO:0045449 regulation of transcription InterPro:IPR008831 GO:0045449 regulation of transcription InterPro:IPR008895 GO:0045449 regulation of transcription InterPro:IPR008917 GO:0045449 regulation of transcription InterPro:IPR008967 GO:0045449 regulation of transcription InterPro:IPR009110 GO:0045449 regulation of transcription InterPro:IPR009146 GO:0045449 regulation of transcription InterPro:IPR009170 GO:0045449 regulation of transcription InterPro:IPR009184 GO:0045449 regulation of transcription InterPro:IPR009210 GO:0045449 regulation of transcription InterPro:IPR009349 GO:0045449 regulation of transcription InterPro:IPR009429 GO:0045449 regulation of transcription InterPro:IPR009554 GO:0045449 regulation of transcription InterPro:IPR010525 GO:0045449 regulation of transcription InterPro:IPR010534 GO:0045449 regulation of transcription InterPro:IPR010684 GO:0045449 regulation of transcription InterPro:IPR010912 GO:0045449 regulation of transcription InterPro:IPR010981 GO:0045449 regulation of transcription InterPro:IPR010985 GO:0045449 regulation of transcription InterPro:IPR011075 GO:0045449 regulation of transcription InterPro:IPR011494 GO:0045449 regulation of transcription InterPro:IPR011520 GO:0045449 regulation of transcription InterPro:IPR011539 GO:0045449 regulation of transcription InterPro:IPR011598 GO:0045449 regulation of transcription InterPro:IPR011663 GO:0045449 regulation of transcription InterPro:IPR011794 GO:0045449 regulation of transcription InterPro:IPR012052 GO:0045449 regulation of transcription InterPro:IPR012113 GO:0045449 regulation of transcription InterPro:IPR012129 GO:0045449 regulation of transcription InterPro:IPR012170 GO:0045449 regulation of transcription InterPro:IPR012270 GO:0045449 regulation of transcription InterPro:IPR012287 GO:0045449 regulation of transcription InterPro:IPR012288 GO:0045449 regulation of transcription InterPro:IPR012318 GO:0045449 regulation of transcription InterPro:IPR012423 GO:0045449 regulation of transcription InterPro:IPR012642 GO:0045449 regulation of transcription InterPro:IPR012781 GO:0045449 regulation of transcription InterPro:IPR012845 GO:0045449 regulation of transcription InterPro:IPR012890 GO:0045449 regulation of transcription InterPro:IPR012900 GO:0045449 regulation of transcription InterPro:IPR012957 GO:0045449 regulation of transcription InterPro:IPR012958 GO:0045449 regulation of transcription InterPro:IPR013137 GO:0045449 regulation of transcription InterPro:IPR013192 GO:0045449 regulation of transcription InterPro:IPR013193 GO:0045449 regulation of transcription InterPro:IPR013321 GO:0045449 regulation of transcription InterPro:IPR013503 GO:0045449 regulation of transcription InterPro:IPR013516 GO:0045449 regulation of transcription InterPro:IPR013654 GO:0045449 regulation of transcription InterPro:IPR013700 GO:0045449 regulation of transcription InterPro:IPR014410 GO:0045449 regulation of transcription InterPro:IPR014744 GO:0045449 regulation of transcription InterPro:IPR014920 GO:0045449 regulation of transcription InterPro:IPR014978 GO:0045449 regulation of transcription InterPro:IPR015115 GO:0045449 regulation of transcription InterPro:IPR015265 GO:0045449 regulation of transcription InterPro:IPR015350 GO:0045449 regulation of transcription InterPro:IPR016132 GO:0045449 regulation of transcription InterPro:IPR017366 GO:0045449 regulation of transcription InterPro:IPR022783 GO:0045449 regulation of transcription JCVI_TIGRFAMS:TIGR00244 GO:0045449 regulation of transcription JCVI_TIGRFAMS:TIGR01636 GO:0045449 regulation of transcription JCVI_TIGRFAMS:TIGR01637 GO:0045449 regulation of transcription JCVI_TIGRFAMS:TIGR01955 GO:0045449 regulation of transcription JCVI_TIGRFAMS:TIGR02420 GO:0045449 regulation of transcription JCVI_TIGRFAMS:TIGR02702 GO:0045449 regulation of transcription JCVI_TIGRFAMS:TIGR02886 GO:0045449 regulation of transcription MIPS_funcat:11.02.03.04 GO:0045449 regulation of transcription Pfam:PF00010 GO:0045449 regulation of transcription Pfam:PF00292 GO:0045449 regulation of transcription Pfam:PF00554 GO:0045449 regulation of transcription Pfam:PF01096 GO:0045449 regulation of transcription Pfam:PF01698 GO:0045449 regulation of transcription Pfam:PF01853 GO:0045449 regulation of transcription Pfam:PF02146 GO:0045449 regulation of transcription Pfam:PF02309 GO:0045449 regulation of transcription Pfam:PF02365 GO:0045449 regulation of transcription Pfam:PF02701 GO:0045449 regulation of transcription Pfam:PF02820 GO:0045449 regulation of transcription Pfam:PF03106 GO:0045449 regulation of transcription Pfam:PF03859 GO:0045449 regulation of transcription Pfam:PF03979 GO:0045449 regulation of transcription Pfam:PF04056 GO:0045449 regulation of transcription Pfam:PF04065 GO:0045449 regulation of transcription Pfam:PF04153 GO:0045449 regulation of transcription Pfam:PF04309 GO:0045449 regulation of transcription Pfam:PF04353 GO:0045449 regulation of transcription Pfam:PF04487 GO:0045449 regulation of transcription Pfam:PF04494 GO:0045449 regulation of transcription Pfam:PF04574 GO:0045449 regulation of transcription Pfam:PF04589 GO:0045449 regulation of transcription Pfam:PF04606 GO:0045449 regulation of transcription Pfam:PF04611 GO:0045449 regulation of transcription Pfam:PF04689 GO:0045449 regulation of transcription Pfam:PF04704 GO:0045449 regulation of transcription Pfam:PF04731 GO:0045449 regulation of transcription Pfam:PF04838 GO:0045449 regulation of transcription Pfam:PF05044 GO:0045449 regulation of transcription Pfam:PF05098 GO:0045449 regulation of transcription Pfam:PF05269 GO:0045449 regulation of transcription Pfam:PF05443 GO:0045449 regulation of transcription Pfam:PF05459 GO:0045449 regulation of transcription Pfam:PF05669 GO:0045449 regulation of transcription Pfam:PF05764 GO:0045449 regulation of transcription Pfam:PF05847 GO:0045449 regulation of transcription Pfam:PF05920 GO:0045449 regulation of transcription Pfam:PF06221 GO:0045449 regulation of transcription Pfam:PF06385 GO:0045449 regulation of transcription Pfam:PF06507 GO:0045449 regulation of transcription Pfam:PF06530 GO:0045449 regulation of transcription Pfam:PF06667 GO:0045449 regulation of transcription Pfam:PF06881 GO:0045449 regulation of transcription Pfam:PF07545 GO:0045449 regulation of transcription Pfam:PF07569 GO:0045449 regulation of transcription Pfam:PF07702 GO:0045449 regulation of transcription Pfam:PF07777 GO:0045449 regulation of transcription Pfam:PF07842 GO:0045449 regulation of transcription Pfam:PF07904 GO:0045449 regulation of transcription Pfam:PF07988 GO:0045449 regulation of transcription Pfam:PF08073 GO:0045449 regulation of transcription Pfam:PF08074 GO:0045449 regulation of transcription Pfam:PF08271 GO:0045449 regulation of transcription Pfam:PF08300 GO:0045449 regulation of transcription Pfam:PF08301 GO:0045449 regulation of transcription Pfam:PF08446 GO:0045449 regulation of transcription Pfam:PF08493 GO:0045449 regulation of transcription Pfam:PF08671 GO:0045449 regulation of transcription Pfam:PF08815 GO:0045449 regulation of transcription Pfam:PF08880 GO:0045449 regulation of transcription Pfam:PF09026 GO:0045449 regulation of transcription Pfam:PF09030 GO:0045449 regulation of transcription Pfam:PF09182 GO:0045449 regulation of transcription Pfam:PF09270 GO:0045449 regulation of transcription PIRSF:PIRSF000084 GO:0045449 regulation of transcription PIRSF:PIRSF002395 GO:0045449 regulation of transcription PIRSF:PIRSF002937 GO:0045449 regulation of transcription PIRSF:PIRSF003669 GO:0045449 regulation of transcription PIRSF:PIRSF005259 GO:0045449 regulation of transcription PIRSF:PIRSF005290 GO:0045449 regulation of transcription PIRSF:PIRSF006171 GO:0045449 regulation of transcription PIRSF:PIRSF006198 GO:0045449 regulation of transcription PIRSF:PIRSF015919 GO:0045449 regulation of transcription PIRSF:PIRSF016548 GO:0045449 regulation of transcription PIRSF:PIRSF027019 GO:0045449 regulation of transcription PIRSF:PIRSF036385 GO:0045449 regulation of transcription PIRSF:PIRSF036579 GO:0045449 regulation of transcription PIRSF:PIRSF038051 GO:0045449 regulation of transcription PRINTS:PR00027 GO:0045449 regulation of transcription PRINTS:PR00726 GO:0045449 regulation of transcription PRINTS:PR01719 GO:0045449 regulation of transcription PRINTS:PR01850 GO:0045449 regulation of transcription ProDom:PD007170 GO:0045449 regulation of transcription ProDom:PD007478 GO:0045449 regulation of transcription ProDom:PD016258 GO:0045449 regulation of transcription ProDom:PD029816 GO:0045449 regulation of transcription ProDom:PD407430 GO:0045449 regulation of transcription PROSITE:MF_01121 GO:0045449 regulation of transcription PROSITE:PS00034 GO:0045449 regulation of transcription PROSITE:PS00245 GO:0045449 regulation of transcription PROSITE:PS00466 GO:0045449 regulation of transcription PROSITE:PS01361 GO:0045449 regulation of transcription PROSITE:PS50046 GO:0045449 regulation of transcription PROSITE:PS50254 GO:0045449 regulation of transcription PROSITE:PS50305 GO:0045449 regulation of transcription PROSITE:PS50811 GO:0045449 regulation of transcription PROSITE:PS50884 GO:0045449 regulation of transcription PROSITE:PS50888 GO:0045449 regulation of transcription PROSITE:PS50917 GO:0045449 regulation of transcription PROSITE:PS51005 GO:0045449 regulation of transcription PROSITE:PS51057 GO:0045449 regulation of transcription PROSITE:PS51063 GO:0045449 regulation of transcription PROSITE:PS51079 GO:0045449 regulation of transcription PROSITE:PS51133 GO:0045449 regulation of transcription PROSITE:PS51134 GO:0045449 regulation of transcription PROSITE:PS51437 GO:0045449 regulation of transcription PROSITE:PS51500 GO:0045449 regulation of transcription SMART:SM00351 GO:0045449 regulation of transcription SMART:SM00353 GO:0045449 regulation of transcription SMART:SM00440 GO:0045449 regulation of transcription SMART:SM00561 GO:0045449 regulation of transcription SMART:SM00774 GO:0045449 regulation of transcription SMART:SM00866 GO:0045449 regulation of transcription SMART:SM00951 GO:0045449 regulation of transcription SP_KW:KW-0805
positive regulation of transcription
GO:0045941 positive regulation of transcription HAMAP:MF_00779 GO:0045941 positive regulation of transcription HAMAP:MF_01178 GO:0045941 positive regulation of transcription InterPro:IPR004120 GO:0045941 positive regulation of transcription InterPro:IPR004247 GO:0045941 positive regulation of transcription InterPro:IPR004619 GO:0045941 positive regulation of transcription InterPro:IPR004956 GO:0045941 positive regulation of transcription InterPro:IPR005205 GO:0045941 positive regulation of transcription InterPro:IPR005206 GO:0045941 positive regulation of transcription InterPro:IPR006897 GO:0045941 positive regulation of transcription InterPro:IPR006898 GO:0045941 positive regulation of transcription InterPro:IPR006899 GO:0045941 positive regulation of transcription InterPro:IPR007532 GO:0045941 positive regulation of transcription InterPro:IPR007911 GO:0045941 positive regulation of transcription InterPro:IPR007944 GO:0045941 positive regulation of transcription InterPro:IPR008013 GO:0045941 positive regulation of transcription InterPro:IPR008851 GO:0045941 positive regulation of transcription InterPro:IPR009287 GO:0045941 positive regulation of transcription InterPro:IPR009508 GO:0045941 positive regulation of transcription InterPro:IPR011399 GO:0045941 positive regulation of transcription InterPro:IPR011665 GO:0045941 positive regulation of transcription InterPro:IPR011789 GO:0045941 positive regulation of transcription InterPro:IPR012787 GO:0045941 positive regulation of transcription InterPro:IPR012794 GO:0045941 positive regulation of transcription InterPro:IPR016679 GO:0045941 positive regulation of transcription JCVI_TIGRFAMS:TIGR01716 GO:0045941 positive regulation of transcription JCVI_TIGRFAMS:TIGR02915 GO:0045941 positive regulation of transcription Pfam:PF02959 GO:0045941 positive regulation of transcription Pfam:PF02998 GO:0045941 positive regulation of transcription Pfam:PF03274 GO:0045941 positive regulation of transcription Pfam:PF03309 GO:0045941 positive regulation of transcription Pfam:PF03584 GO:0045941 positive regulation of transcription Pfam:PF03585 GO:0045941 positive regulation of transcription Pfam:PF04441 GO:0045941 positive regulation of transcription Pfam:PF04812 GO:0045941 positive regulation of transcription Pfam:PF04813 GO:0045941 positive regulation of transcription Pfam:PF04814 GO:0045941 positive regulation of transcription Pfam:PF05247 GO:0045941 positive regulation of transcription Pfam:PF05280 GO:0045941 positive regulation of transcription Pfam:PF05349 GO:0045941 positive regulation of transcription Pfam:PF05793 GO:0045941 positive regulation of transcription Pfam:PF06573 GO:0045941 positive regulation of transcription Pfam:PF07741 GO:0045941 positive regulation of transcription PIRSF:PIRSF016992 GO:0045941 positive regulation of transcription PIRSF:PIRSF025023 GO:0045941 positive regulation of transcription PIRSF:PIRSF036354 GO:0045941 positive regulation of transcription ProDom:PD007233 GO:0045941 positive regulation of transcription ProDom:PD015582 GO:0045941 positive regulation of transcription ProDom:PD016592 GO:0045941 positive regulation of transcription ProDom:PD355092 GO:0045941 positive regulation of transcription PROSITE:MF_01274 GO:0045941 positive regulation of transcription Reactome:1006808 GO:0045941 positive regulation of transcription Reactome:1025094 GO:0045941 positive regulation of transcription Reactome:1052118 GO:0045941 positive regulation of transcription Reactome:1077051 GO:0045941 positive regulation of transcription Reactome:1097542 GO:0045941 positive regulation of transcription Reactome:1116833 GO:0045941 positive regulation of transcription Reactome:1140675 GO:0045941 positive regulation of transcription Reactome:1170921 GO:0045941 positive regulation of transcription Reactome:1192674 GO:0045941 positive regulation of transcription Reactome:1206838 GO:0045941 positive regulation of transcription Reactome:1221380 GO:0045941 positive regulation of transcription Reactome:1239363 GO:0045941 positive regulation of transcription Reactome:1247032 GO:0045941 positive regulation of transcription Reactome:1252712 GO:0045941 positive regulation of transcription Reactome:1258516 GO:0045941 positive regulation of transcription Reactome:1262144 GO:0045941 positive regulation of transcription Reactome:1264256 GO:0045941 positive regulation of transcription Reactome:1265693 GO:0045941 positive regulation of transcription Reactome:1266788 GO:0045941 positive regulation of transcription Reactome:163765 GO:0045941 positive regulation of transcription Reactome:980204